Strain Fitness in Pseudomonas sp. S08-1 around OH686_20475

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20470 and OH686_20475 are separated by 98 nucleotidesOH686_20475 and OH686_20480 are separated by 221 nucleotides OH686_20470: OH686_20470 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 4,181,292 to 4,183,583 _20470 OH686_20475: OH686_20475 - 4'-phosphopantetheinyl transferase entD / Holo-[acyl-carrier protein] synthase, alternative , at 4,183,682 to 4,184,374 _20475 OH686_20480: OH686_20480 - Dienelactone hydrolase family protein, at 4,184,596 to 4,185,375 _20480 Position (kb) 4183 4184 4185Strain fitness (log2 ratio) -1 0 1 2at 4182.684 kb on + strand, within OH686_20470at 4182.684 kb on + strand, within OH686_20470at 4182.684 kb on + strand, within OH686_20470at 4182.685 kb on - strand, within OH686_20470at 4182.685 kb on - strand, within OH686_20470at 4182.685 kb on - strand, within OH686_20470at 4182.782 kb on + strand, within OH686_20470at 4182.782 kb on + strand, within OH686_20470at 4182.792 kb on + strand, within OH686_20470at 4182.792 kb on + strand, within OH686_20470at 4182.792 kb on + strand, within OH686_20470at 4182.792 kb on + strand, within OH686_20470at 4182.792 kb on + strand, within OH686_20470at 4182.792 kb on + strand, within OH686_20470at 4182.793 kb on - strand, within OH686_20470at 4182.793 kb on - strand, within OH686_20470at 4182.793 kb on - strand, within OH686_20470at 4182.816 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.849 kb on + strand, within OH686_20470at 4182.850 kb on - strand, within OH686_20470at 4182.850 kb on - strand, within OH686_20470at 4182.850 kb on - strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.882 kb on + strand, within OH686_20470at 4182.883 kb on - strand, within OH686_20470at 4182.883 kb on - strand, within OH686_20470at 4182.883 kb on - strand, within OH686_20470at 4182.883 kb on - strand, within OH686_20470at 4182.883 kb on - strand, within OH686_20470at 4183.164 kb on + strand, within OH686_20470at 4183.164 kb on + strand, within OH686_20470at 4183.165 kb on - strand, within OH686_20470at 4183.165 kb on - strand, within OH686_20470at 4183.245 kb on + strand, within OH686_20470at 4183.245 kb on + strand, within OH686_20470at 4183.245 kb on + strand, within OH686_20470at 4183.246 kb on - strand, within OH686_20470at 4183.246 kb on - strand, within OH686_20470at 4183.246 kb on - strand, within OH686_20470at 4183.246 kb on - strand, within OH686_20470at 4183.246 kb on - strand, within OH686_20470at 4183.246 kb on - strand, within OH686_20470at 4183.386 kb on + strandat 4183.386 kb on + strandat 4183.386 kb on + strandat 4183.386 kb on + strandat 4183.386 kb on + strandat 4183.387 kb on - strandat 4183.387 kb on - strandat 4183.387 kb on - strandat 4183.581 kb on + strandat 4183.582 kb on - strandat 4183.582 kb on - strandat 4183.582 kb on - strandat 4183.582 kb on - strandat 4183.582 kb on - strandat 4183.582 kb on - strandat 4183.642 kb on + strandat 4183.642 kb on + strandat 4183.642 kb on + strandat 4183.643 kb on - strandat 4183.643 kb on - strandat 4183.683 kb on + strandat 4183.683 kb on + strandat 4183.683 kb on + strandat 4183.683 kb on + strandat 4183.683 kb on + strandat 4183.683 kb on + strandat 4183.684 kb on - strandat 4183.684 kb on - strandat 4183.684 kb on - strandat 4183.684 kb on - strandat 4183.684 kb on - strandat 4183.684 kb on - strandat 4183.684 kb on - strandat 4184.417 kb on + strandat 4184.417 kb on + strandat 4184.494 kb on + strandat 4184.495 kb on - strandat 4184.546 kb on + strandat 4184.546 kb on + strandat 4184.546 kb on + strandat 4184.546 kb on + strandat 4184.547 kb on - strandat 4184.547 kb on - strandat 4184.551 kb on + strandat 4184.551 kb on + strandat 4184.552 kb on - strandat 4184.552 kb on - strandat 4184.748 kb on - strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.122 kb on + strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.123 kb on - strand, within OH686_20480at 4185.185 kb on + strand, within OH686_20480at 4185.185 kb on + strand, within OH686_20480at 4185.185 kb on + strand, within OH686_20480at 4185.296 kb on + strand, within OH686_20480at 4185.296 kb on + strand, within OH686_20480at 4185.296 kb on + strand, within OH686_20480at 4185.296 kb on + strand, within OH686_20480at 4185.296 kb on + strand, within OH686_20480at 4185.297 kb on - strand, within OH686_20480

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,182,684 + OH686_20470 0.61 +0.0
4,182,684 + OH686_20470 0.61 -0.6
4,182,684 + OH686_20470 0.61 -0.0
4,182,685 - OH686_20470 0.61 +0.2
4,182,685 - OH686_20470 0.61 +1.1
4,182,685 - OH686_20470 0.61 -0.4
4,182,782 + OH686_20470 0.65 +0.7
4,182,782 + OH686_20470 0.65 -0.5
4,182,792 + OH686_20470 0.65 +0.9
4,182,792 + OH686_20470 0.65 +0.5
4,182,792 + OH686_20470 0.65 +0.7
4,182,792 + OH686_20470 0.65 -1.2
4,182,792 + OH686_20470 0.65 -1.0
4,182,792 + OH686_20470 0.65 +1.1
4,182,793 - OH686_20470 0.65 +0.2
4,182,793 - OH686_20470 0.65 -0.1
4,182,793 - OH686_20470 0.65 -0.7
4,182,816 + OH686_20470 0.66 +0.3
4,182,849 + OH686_20470 0.68 +0.4
4,182,849 + OH686_20470 0.68 +0.7
4,182,849 + OH686_20470 0.68 -0.5
4,182,849 + OH686_20470 0.68 +0.4
4,182,849 + OH686_20470 0.68 -0.4
4,182,849 + OH686_20470 0.68 +0.4
4,182,849 + OH686_20470 0.68 -0.1
4,182,849 + OH686_20470 0.68 +0.6
4,182,850 - OH686_20470 0.68 -0.5
4,182,850 - OH686_20470 0.68 +0.5
4,182,850 - OH686_20470 0.68 +0.1
4,182,882 + OH686_20470 0.69 +1.3
4,182,882 + OH686_20470 0.69 -0.2
4,182,882 + OH686_20470 0.69 +1.3
4,182,882 + OH686_20470 0.69 -0.3
4,182,882 + OH686_20470 0.69 +0.9
4,182,882 + OH686_20470 0.69 -0.1
4,182,882 + OH686_20470 0.69 +1.8
4,182,883 - OH686_20470 0.69 -0.1
4,182,883 - OH686_20470 0.69 -0.5
4,182,883 - OH686_20470 0.69 -0.3
4,182,883 - OH686_20470 0.69 -1.0
4,182,883 - OH686_20470 0.69 -0.3
4,183,164 + OH686_20470 0.82 +0.1
4,183,164 + OH686_20470 0.82 -0.0
4,183,165 - OH686_20470 0.82 +0.6
4,183,165 - OH686_20470 0.82 -1.5
4,183,245 + OH686_20470 0.85 +0.5
4,183,245 + OH686_20470 0.85 -0.1
4,183,245 + OH686_20470 0.85 -0.3
4,183,246 - OH686_20470 0.85 +0.0
4,183,246 - OH686_20470 0.85 -1.0
4,183,246 - OH686_20470 0.85 +0.1
4,183,246 - OH686_20470 0.85 -0.4
4,183,246 - OH686_20470 0.85 -0.0
4,183,246 - OH686_20470 0.85 +0.6
4,183,386 + +0.0
4,183,386 + +1.1
4,183,386 + +0.8
4,183,386 + +1.0
4,183,386 + -0.7
4,183,387 - -0.6
4,183,387 - -0.8
4,183,387 - -0.9
4,183,581 + -0.6
4,183,582 - -1.3
4,183,582 - +0.1
4,183,582 - +0.1
4,183,582 - -0.1
4,183,582 - -0.1
4,183,582 - +0.0
4,183,642 + -0.7
4,183,642 + -0.5
4,183,642 + +0.7
4,183,643 - -0.7
4,183,643 - -0.1
4,183,683 + +1.0
4,183,683 + +0.6
4,183,683 + -1.1
4,183,683 + +0.1
4,183,683 + -0.9
4,183,683 + -0.3
4,183,684 - -0.9
4,183,684 - +0.2
4,183,684 - -0.5
4,183,684 - -0.6
4,183,684 - -1.4
4,183,684 - +0.4
4,183,684 - -0.2
4,184,417 + +0.2
4,184,417 + -0.4
4,184,494 + -0.9
4,184,495 - +0.2
4,184,546 + +0.3
4,184,546 + +0.8
4,184,546 + -0.7
4,184,546 + +0.2
4,184,547 - +0.7
4,184,547 - -0.1
4,184,551 + +0.3
4,184,551 + -0.7
4,184,552 - +0.1
4,184,552 - -0.8
4,184,748 - OH686_20480 0.19 -0.2
4,185,122 + OH686_20480 0.67 -0.6
4,185,122 + OH686_20480 0.67 +0.7
4,185,122 + OH686_20480 0.67 -1.0
4,185,122 + OH686_20480 0.67 -0.8
4,185,122 + OH686_20480 0.67 +1.5
4,185,122 + OH686_20480 0.67 -1.1
4,185,122 + OH686_20480 0.67 +0.0
4,185,122 + OH686_20480 0.67 +0.5
4,185,122 + OH686_20480 0.67 -0.5
4,185,122 + OH686_20480 0.67 +0.8
4,185,122 + OH686_20480 0.67 -0.1
4,185,122 + OH686_20480 0.67 -0.4
4,185,122 + OH686_20480 0.67 -1.1
4,185,122 + OH686_20480 0.67 -0.7
4,185,122 + OH686_20480 0.67 -1.5
4,185,122 + OH686_20480 0.67 -0.2
4,185,122 + OH686_20480 0.67 -0.6
4,185,122 + OH686_20480 0.67 -0.5
4,185,122 + OH686_20480 0.67 -0.3
4,185,122 + OH686_20480 0.67 -0.2
4,185,122 + OH686_20480 0.67 -1.4
4,185,122 + OH686_20480 0.67 +0.6
4,185,122 + OH686_20480 0.67 +0.3
4,185,123 - OH686_20480 0.68 -0.1
4,185,123 - OH686_20480 0.68 +0.1
4,185,123 - OH686_20480 0.68 +0.2
4,185,123 - OH686_20480 0.68 -0.4
4,185,123 - OH686_20480 0.68 +0.6
4,185,123 - OH686_20480 0.68 +1.1
4,185,123 - OH686_20480 0.68 -0.4
4,185,123 - OH686_20480 0.68 +1.8
4,185,123 - OH686_20480 0.68 -0.1
4,185,123 - OH686_20480 0.68 -0.8
4,185,123 - OH686_20480 0.68 -0.2
4,185,123 - OH686_20480 0.68 -1.1
4,185,123 - OH686_20480 0.68 +1.6
4,185,123 - OH686_20480 0.68 +0.4
4,185,123 - OH686_20480 0.68 +0.0
4,185,123 - OH686_20480 0.68 +0.4
4,185,123 - OH686_20480 0.68 +0.7
4,185,123 - OH686_20480 0.68 -1.0
4,185,185 + OH686_20480 0.76 +0.6
4,185,185 + OH686_20480 0.76 -0.2
4,185,185 + OH686_20480 0.76 -0.2
4,185,296 + OH686_20480 0.90 -1.0
4,185,296 + OH686_20480 0.90 +0.1
4,185,296 + OH686_20480 0.90 +0.0
4,185,296 + OH686_20480 0.90 +0.3
4,185,296 + OH686_20480 0.90 +0.5
4,185,297 - OH686_20480 0.90 +0.3

Or see this region's nucleotide sequence