Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_19965 and OH686_19970 overlap by 4 nucleotides OH686_19970 and OH686_19975 are separated by 143 nucleotides OH686_19975 and OH686_19980 are separated by 101 nucleotides OH686_19980 and OH686_19985 overlap by 8 nucleotides
OH686_19965: OH686_19965 - Alkylated DNA repair protein AlkB, at 4,086,768 to 4,087,370
_19965
OH686_19970: OH686_19970 - hypothetical protein, at 4,087,367 to 4,087,519
_19970
OH686_19975: OH686_19975 - hypothetical protein, at 4,087,663 to 4,087,794
_19975
OH686_19980: OH686_19980 - Ammonia monooxygenase, at 4,087,896 to 4,088,912
_19980
OH686_19985: OH686_19985 - Tripartite tricarboxylate transporter TctA family, at 4,088,905 to 4,090,413
_19985
Position (kb) 4087
4088
4089 Strain fitness (log2 ratio) -1
0
1 at 4086.940 kb on + strand, within OH686_19965 at 4086.941 kb on - strand, within OH686_19965 at 4086.941 kb on - strand, within OH686_19965 at 4086.972 kb on + strand, within OH686_19965 at 4087.090 kb on - strand, within OH686_19965 at 4087.138 kb on + strand, within OH686_19965 at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.535 kb on - strand at 4087.620 kb on + strand at 4087.620 kb on + strand at 4087.620 kb on + strand at 4087.621 kb on - strand at 4087.679 kb on + strand, within OH686_19975 at 4087.679 kb on + strand, within OH686_19975 at 4087.679 kb on + strand, within OH686_19975 at 4087.679 kb on + strand, within OH686_19975 at 4087.679 kb on + strand, within OH686_19975 at 4087.679 kb on + strand, within OH686_19975 at 4087.679 kb on + strand, within OH686_19975 at 4087.680 kb on - strand, within OH686_19975 at 4087.680 kb on - strand, within OH686_19975 at 4087.680 kb on - strand, within OH686_19975 at 4087.680 kb on - strand, within OH686_19975 at 4087.680 kb on - strand, within OH686_19975 at 4087.792 kb on + strand at 4087.792 kb on + strand at 4087.824 kb on + strand at 4087.824 kb on + strand at 4087.824 kb on + strand at 4087.824 kb on + strand at 4087.824 kb on + strand at 4087.825 kb on - strand at 4087.825 kb on - strand at 4087.886 kb on + strand at 4087.886 kb on + strand at 4087.887 kb on - strand at 4087.898 kb on - strand at 4088.370 kb on + strand, within OH686_19980 at 4088.370 kb on + strand, within OH686_19980 at 4088.371 kb on - strand, within OH686_19980 at 4088.867 kb on - strand at 4088.906 kb on + strand at 4088.906 kb on + strand at 4088.906 kb on + strand at 4088.906 kb on + strand at 4088.907 kb on - strand at 4089.197 kb on + strand, within OH686_19985 at 4089.197 kb on + strand, within OH686_19985 at 4089.197 kb on + strand, within OH686_19985 at 4089.198 kb on - strand, within OH686_19985 at 4089.198 kb on - strand, within OH686_19985 at 4089.198 kb on - strand, within OH686_19985 at 4089.335 kb on - strand, within OH686_19985 at 4089.392 kb on + strand, within OH686_19985 at 4089.392 kb on + strand, within OH686_19985 at 4089.392 kb on + strand, within OH686_19985 at 4089.392 kb on + strand, within OH686_19985 at 4089.393 kb on - strand, within OH686_19985 at 4089.393 kb on - strand, within OH686_19985 at 4089.393 kb on - strand, within OH686_19985 at 4089.393 kb on - strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.572 kb on + strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.573 kb on - strand, within OH686_19985 at 4089.836 kb on + strand, within OH686_19985 at 4089.837 kb on - strand, within OH686_19985
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 4,086,940 + OH686_19965 0.29 +0.3 4,086,941 - OH686_19965 0.29 +0.4 4,086,941 - OH686_19965 0.29 +0.9 4,086,972 + OH686_19965 0.34 +0.1 4,087,090 - OH686_19965 0.53 -0.5 4,087,138 + OH686_19965 0.61 +0.3 4,087,535 - -1.5 4,087,535 - -0.4 4,087,535 - +0.6 4,087,535 - -0.9 4,087,535 - -0.4 4,087,535 - -0.1 4,087,535 - +0.3 4,087,535 - +0.0 4,087,620 + +0.5 4,087,620 + -0.8 4,087,620 + -1.3 4,087,621 - +0.3 4,087,679 + OH686_19975 0.12 -0.6 4,087,679 + OH686_19975 0.12 -0.5 4,087,679 + OH686_19975 0.12 +0.4 4,087,679 + OH686_19975 0.12 +0.4 4,087,679 + OH686_19975 0.12 -0.5 4,087,679 + OH686_19975 0.12 -0.7 4,087,679 + OH686_19975 0.12 +0.6 4,087,680 - OH686_19975 0.13 -0.1 4,087,680 - OH686_19975 0.13 +0.3 4,087,680 - OH686_19975 0.13 +0.3 4,087,680 - OH686_19975 0.13 +0.1 4,087,680 - OH686_19975 0.13 -0.7 4,087,792 + -0.5 4,087,792 + +0.4 4,087,824 + -0.6 4,087,824 + +0.7 4,087,824 + +0.1 4,087,824 + +0.5 4,087,824 + +0.6 4,087,825 - -1.1 4,087,825 - -0.3 4,087,886 + +0.7 4,087,886 + -0.6 4,087,887 - -0.6 4,087,898 - +0.2 4,088,370 + OH686_19980 0.47 +0.2 4,088,370 + OH686_19980 0.47 -1.4 4,088,371 - OH686_19980 0.47 -0.5 4,088,867 - +1.2 4,088,906 + -1.3 4,088,906 + -1.1 4,088,906 + -1.4 4,088,906 + +0.4 4,088,907 - -0.1 4,089,197 + OH686_19985 0.19 +0.5 4,089,197 + OH686_19985 0.19 +0.1 4,089,197 + OH686_19985 0.19 +0.1 4,089,198 - OH686_19985 0.19 +0.2 4,089,198 - OH686_19985 0.19 +1.0 4,089,198 - OH686_19985 0.19 +0.3 4,089,335 - OH686_19985 0.28 +0.3 4,089,392 + OH686_19985 0.32 -0.4 4,089,392 + OH686_19985 0.32 -0.1 4,089,392 + OH686_19985 0.32 +0.3 4,089,392 + OH686_19985 0.32 +0.1 4,089,393 - OH686_19985 0.32 -0.6 4,089,393 - OH686_19985 0.32 +0.2 4,089,393 - OH686_19985 0.32 +0.4 4,089,393 - OH686_19985 0.32 -0.1 4,089,572 + OH686_19985 0.44 +1.1 4,089,572 + OH686_19985 0.44 -0.3 4,089,572 + OH686_19985 0.44 +0.2 4,089,572 + OH686_19985 0.44 -0.9 4,089,572 + OH686_19985 0.44 -0.2 4,089,572 + OH686_19985 0.44 -0.4 4,089,572 + OH686_19985 0.44 +0.2 4,089,572 + OH686_19985 0.44 -0.6 4,089,572 + OH686_19985 0.44 -0.6 4,089,572 + OH686_19985 0.44 +0.0 4,089,572 + OH686_19985 0.44 -0.6 4,089,572 + OH686_19985 0.44 -1.2 4,089,572 + OH686_19985 0.44 +0.5 4,089,573 - OH686_19985 0.44 +1.1 4,089,573 - OH686_19985 0.44 -0.5 4,089,573 - OH686_19985 0.44 +0.1 4,089,573 - OH686_19985 0.44 +0.7 4,089,573 - OH686_19985 0.44 -0.2 4,089,573 - OH686_19985 0.44 +0.4 4,089,573 - OH686_19985 0.44 -0.2 4,089,573 - OH686_19985 0.44 +0.1 4,089,573 - OH686_19985 0.44 -0.5 4,089,573 - OH686_19985 0.44 +0.8 4,089,573 - OH686_19985 0.44 +0.1 4,089,573 - OH686_19985 0.44 +0.1 4,089,573 - OH686_19985 0.44 +0.5 4,089,573 - OH686_19985 0.44 -1.4 4,089,573 - OH686_19985 0.44 +1.0 4,089,836 + OH686_19985 0.62 +0.3 4,089,837 - OH686_19985 0.62 -0.4
Or see this region's nucleotide sequence