Strain Fitness in Pseudomonas sp. S08-1 around OH686_14835

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14825 and OH686_14830 are separated by 93 nucleotidesOH686_14830 and OH686_14835 are separated by 53 nucleotidesOH686_14835 and OH686_14840 overlap by 24 nucleotides OH686_14825: OH686_14825 - hypothetical protein, at 3,116,917 to 3,117,912 _14825 OH686_14830: OH686_14830 - CBS domain protein, at 3,118,006 to 3,118,440 _14830 OH686_14835: OH686_14835 - CDS, at 3,118,494 to 3,118,634 _14835 OH686_14840: OH686_14840 - Inner membrane protein CreD, at 3,118,611 to 3,120,014 _14840 Position (kb) 3118 3119Strain fitness (log2 ratio) -2 -1 0 1 2at 3117.494 kb on - strand, within OH686_14825at 3117.494 kb on - strand, within OH686_14825at 3117.528 kb on + strand, within OH686_14825at 3117.528 kb on + strand, within OH686_14825at 3117.528 kb on + strand, within OH686_14825at 3117.530 kb on - strand, within OH686_14825at 3117.736 kb on + strand, within OH686_14825at 3117.736 kb on + strand, within OH686_14825at 3117.736 kb on + strand, within OH686_14825at 3117.737 kb on - strand, within OH686_14825at 3117.737 kb on - strand, within OH686_14825at 3117.737 kb on - strand, within OH686_14825at 3117.737 kb on - strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.739 kb on + strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.740 kb on - strand, within OH686_14825at 3117.920 kb on + strandat 3117.920 kb on + strandat 3117.921 kb on - strandat 3117.921 kb on - strandat 3117.921 kb on - strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.048 kb on + strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.049 kb on - strandat 3118.175 kb on - strand, within OH686_14830at 3118.175 kb on - strand, within OH686_14830at 3118.175 kb on - strand, within OH686_14830at 3118.423 kb on + strandat 3118.423 kb on + strandat 3118.423 kb on + strandat 3118.423 kb on + strandat 3118.423 kb on + strandat 3118.423 kb on + strandat 3118.423 kb on + strandat 3118.424 kb on - strandat 3118.424 kb on - strandat 3118.424 kb on - strandat 3118.424 kb on - strandat 3118.424 kb on - strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.495 kb on + strandat 3118.496 kb on - strandat 3118.496 kb on - strandat 3118.504 kb on + strandat 3118.504 kb on + strandat 3118.504 kb on + strandat 3118.505 kb on - strandat 3118.534 kb on - strand, within OH686_14835at 3118.545 kb on - strand, within OH686_14835at 3118.840 kb on + strand, within OH686_14840at 3118.840 kb on + strand, within OH686_14840at 3118.840 kb on + strand, within OH686_14840at 3118.840 kb on + strand, within OH686_14840at 3118.840 kb on + strand, within OH686_14840at 3118.840 kb on + strand, within OH686_14840at 3118.840 kb on + strand, within OH686_14840at 3118.841 kb on - strand, within OH686_14840at 3118.841 kb on - strand, within OH686_14840at 3118.900 kb on - strand, within OH686_14840at 3118.932 kb on + strand, within OH686_14840at 3118.932 kb on + strand, within OH686_14840at 3118.932 kb on + strand, within OH686_14840at 3118.932 kb on + strand, within OH686_14840at 3118.932 kb on + strand, within OH686_14840at 3118.932 kb on + strand, within OH686_14840at 3118.933 kb on - strand, within OH686_14840at 3118.933 kb on - strand, within OH686_14840at 3118.933 kb on - strand, within OH686_14840at 3118.998 kb on + strand, within OH686_14840at 3118.998 kb on + strand, within OH686_14840at 3118.998 kb on + strand, within OH686_14840at 3118.999 kb on - strand, within OH686_14840at 3118.999 kb on - strand, within OH686_14840at 3118.999 kb on - strand, within OH686_14840at 3118.999 kb on - strand, within OH686_14840at 3118.999 kb on - strand, within OH686_14840at 3118.999 kb on - strand, within OH686_14840at 3119.394 kb on + strand, within OH686_14840at 3119.394 kb on + strand, within OH686_14840at 3119.395 kb on - strand, within OH686_14840at 3119.565 kb on + strand, within OH686_14840at 3119.566 kb on - strand, within OH686_14840at 3119.566 kb on - strand, within OH686_14840at 3119.592 kb on + strand, within OH686_14840at 3119.592 kb on + strand, within OH686_14840at 3119.592 kb on + strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840at 3119.593 kb on - strand, within OH686_14840

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,117,494 - OH686_14825 0.58 +0.9
3,117,494 - OH686_14825 0.58 +0.1
3,117,528 + OH686_14825 0.61 -0.0
3,117,528 + OH686_14825 0.61 +0.5
3,117,528 + OH686_14825 0.61 +0.6
3,117,530 - OH686_14825 0.62 -0.3
3,117,736 + OH686_14825 0.82 -1.9
3,117,736 + OH686_14825 0.82 +1.1
3,117,736 + OH686_14825 0.82 -1.9
3,117,737 - OH686_14825 0.82 +0.1
3,117,737 - OH686_14825 0.82 -0.6
3,117,737 - OH686_14825 0.82 +0.9
3,117,737 - OH686_14825 0.82 -0.8
3,117,739 + OH686_14825 0.83 -0.4
3,117,739 + OH686_14825 0.83 +0.1
3,117,739 + OH686_14825 0.83 -0.2
3,117,739 + OH686_14825 0.83 -0.1
3,117,739 + OH686_14825 0.83 -0.3
3,117,739 + OH686_14825 0.83 +0.2
3,117,739 + OH686_14825 0.83 -0.4
3,117,739 + OH686_14825 0.83 +0.3
3,117,739 + OH686_14825 0.83 +0.1
3,117,739 + OH686_14825 0.83 +0.0
3,117,739 + OH686_14825 0.83 +1.1
3,117,740 - OH686_14825 0.83 -2.0
3,117,740 - OH686_14825 0.83 +0.2
3,117,740 - OH686_14825 0.83 -0.0
3,117,740 - OH686_14825 0.83 +0.2
3,117,740 - OH686_14825 0.83 +0.1
3,117,740 - OH686_14825 0.83 -0.5
3,117,740 - OH686_14825 0.83 +0.4
3,117,740 - OH686_14825 0.83 -0.1
3,117,740 - OH686_14825 0.83 -0.8
3,117,740 - OH686_14825 0.83 +0.4
3,117,740 - OH686_14825 0.83 -1.3
3,117,740 - OH686_14825 0.83 -0.1
3,117,740 - OH686_14825 0.83 +1.1
3,117,740 - OH686_14825 0.83 +0.5
3,117,740 - OH686_14825 0.83 +0.3
3,117,740 - OH686_14825 0.83 +0.6
3,117,740 - OH686_14825 0.83 -0.7
3,117,740 - OH686_14825 0.83 +0.7
3,117,920 + -0.3
3,117,920 + +0.2
3,117,921 - +0.3
3,117,921 - +1.2
3,117,921 - +0.5
3,118,048 + +1.2
3,118,048 + +2.2
3,118,048 + -0.0
3,118,048 + -1.5
3,118,048 + +0.3
3,118,048 + +0.1
3,118,048 + +0.5
3,118,048 + -0.0
3,118,049 - -1.0
3,118,049 - +1.3
3,118,049 - +0.2
3,118,049 - +1.1
3,118,049 - -0.4
3,118,049 - +0.8
3,118,049 - +1.8
3,118,049 - -0.6
3,118,175 - OH686_14830 0.39 +0.8
3,118,175 - OH686_14830 0.39 +0.4
3,118,175 - OH686_14830 0.39 +0.7
3,118,423 + +1.1
3,118,423 + -0.3
3,118,423 + -0.6
3,118,423 + +0.0
3,118,423 + +1.1
3,118,423 + -0.3
3,118,423 + -1.1
3,118,424 - +1.1
3,118,424 - -0.7
3,118,424 - +1.4
3,118,424 - +0.3
3,118,424 - +0.9
3,118,495 + -0.1
3,118,495 + +0.1
3,118,495 + -0.1
3,118,495 + +0.6
3,118,495 + +0.5
3,118,495 + +0.2
3,118,495 + -1.7
3,118,495 + +0.8
3,118,496 - -0.8
3,118,496 - +0.3
3,118,504 + +0.4
3,118,504 + +0.3
3,118,504 + -0.6
3,118,505 - -0.1
3,118,534 - OH686_14835 0.28 -1.2
3,118,545 - OH686_14835 0.36 -1.2
3,118,840 + OH686_14840 0.16 +0.8
3,118,840 + OH686_14840 0.16 +0.1
3,118,840 + OH686_14840 0.16 -0.6
3,118,840 + OH686_14840 0.16 -1.2
3,118,840 + OH686_14840 0.16 +1.2
3,118,840 + OH686_14840 0.16 +0.7
3,118,840 + OH686_14840 0.16 +1.0
3,118,841 - OH686_14840 0.16 -1.2
3,118,841 - OH686_14840 0.16 -0.8
3,118,900 - OH686_14840 0.21 -0.5
3,118,932 + OH686_14840 0.23 -1.3
3,118,932 + OH686_14840 0.23 +0.4
3,118,932 + OH686_14840 0.23 +0.2
3,118,932 + OH686_14840 0.23 -0.8
3,118,932 + OH686_14840 0.23 -1.0
3,118,932 + OH686_14840 0.23 +0.0
3,118,933 - OH686_14840 0.23 -0.8
3,118,933 - OH686_14840 0.23 -0.2
3,118,933 - OH686_14840 0.23 +0.3
3,118,998 + OH686_14840 0.28 -0.1
3,118,998 + OH686_14840 0.28 -0.1
3,118,998 + OH686_14840 0.28 +0.9
3,118,999 - OH686_14840 0.28 +0.6
3,118,999 - OH686_14840 0.28 +1.1
3,118,999 - OH686_14840 0.28 -0.9
3,118,999 - OH686_14840 0.28 +0.3
3,118,999 - OH686_14840 0.28 -0.7
3,118,999 - OH686_14840 0.28 -0.0
3,119,394 + OH686_14840 0.56 +1.4
3,119,394 + OH686_14840 0.56 +2.5
3,119,395 - OH686_14840 0.56 -1.1
3,119,565 + OH686_14840 0.68 +0.2
3,119,566 - OH686_14840 0.68 -0.5
3,119,566 - OH686_14840 0.68 -0.2
3,119,592 + OH686_14840 0.70 +0.6
3,119,592 + OH686_14840 0.70 -0.1
3,119,592 + OH686_14840 0.70 +0.1
3,119,593 - OH686_14840 0.70 +0.5
3,119,593 - OH686_14840 0.70 -1.8
3,119,593 - OH686_14840 0.70 +1.2
3,119,593 - OH686_14840 0.70 -0.1
3,119,593 - OH686_14840 0.70 -0.9
3,119,593 - OH686_14840 0.70 +0.2
3,119,593 - OH686_14840 0.70 -0.6
3,119,593 - OH686_14840 0.70 -0.5
3,119,593 - OH686_14840 0.70 -1.6
3,119,593 - OH686_14840 0.70 -0.2
3,119,593 - OH686_14840 0.70 +0.4

Or see this region's nucleotide sequence