Strain Fitness in Pseudomonas sp. S08-1 around OH686_09475

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09465 and OH686_09470 are separated by 12 nucleotidesOH686_09470 and OH686_09475 are separated by 98 nucleotidesOH686_09475 and OH686_09480 are separated by 15 nucleotides OH686_09465: OH686_09465 - GTP-binding protein HflX, at 1,931,352 to 1,932,653 _09465 OH686_09470: OH686_09470 - RNA chaperone Hfq, at 1,932,666 to 1,932,920 _09470 OH686_09475: OH686_09475 - tRNA dimethylallyltransferase, at 1,933,019 to 1,933,990 _09475 OH686_09480: OH686_09480 - DNA mismatch repair protein MutL, at 1,934,006 to 1,935,886 _09480 Position (kb) 1933 1934Strain fitness (log2 ratio) -2 -1 0 1 2at 1932.038 kb on - strand, within OH686_09465at 1932.038 kb on - strand, within OH686_09465at 1932.495 kb on - strand, within OH686_09465at 1932.664 kb on + strandat 1932.664 kb on + strandat 1932.664 kb on + strandat 1932.665 kb on - strandat 1932.665 kb on - strandat 1932.665 kb on - strandat 1932.708 kb on - strand, within OH686_09470at 1932.708 kb on - strand, within OH686_09470at 1932.708 kb on - strand, within OH686_09470at 1932.948 kb on - strandat 1932.967 kb on - strandat 1932.996 kb on - strandat 1932.996 kb on - strandat 1932.996 kb on - strandat 1933.007 kb on - strandat 1933.007 kb on - strandat 1933.025 kb on + strandat 1933.025 kb on + strandat 1933.026 kb on - strandat 1933.044 kb on + strandat 1933.045 kb on - strandat 1933.054 kb on + strandat 1933.200 kb on + strand, within OH686_09475at 1933.208 kb on + strand, within OH686_09475at 1933.209 kb on - strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.384 kb on + strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.385 kb on - strand, within OH686_09475at 1933.386 kb on + strand, within OH686_09475at 1933.423 kb on + strand, within OH686_09475at 1933.424 kb on - strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.481 kb on + strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.482 kb on - strand, within OH686_09475at 1933.640 kb on - strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.668 kb on + strand, within OH686_09475at 1933.669 kb on - strand, within OH686_09475at 1933.669 kb on - strand, within OH686_09475at 1933.669 kb on - strand, within OH686_09475at 1933.671 kb on + strand, within OH686_09475at 1933.671 kb on + strand, within OH686_09475at 1933.672 kb on - strand, within OH686_09475at 1933.672 kb on - strand, within OH686_09475at 1933.767 kb on + strand, within OH686_09475at 1933.767 kb on + strand, within OH686_09475at 1933.768 kb on - strand, within OH686_09475at 1933.768 kb on - strand, within OH686_09475at 1934.229 kb on + strand, within OH686_09480at 1934.229 kb on + strand, within OH686_09480at 1934.229 kb on + strand, within OH686_09480at 1934.230 kb on - strand, within OH686_09480at 1934.230 kb on - strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.478 kb on + strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.479 kb on - strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.547 kb on + strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.548 kb on - strand, within OH686_09480at 1934.574 kb on + strand, within OH686_09480at 1934.649 kb on + strand, within OH686_09480at 1934.649 kb on + strand, within OH686_09480at 1934.659 kb on - strand, within OH686_09480at 1934.910 kb on + strand, within OH686_09480

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,932,038 - OH686_09465 0.53 -0.2
1,932,038 - OH686_09465 0.53 -1.8
1,932,495 - OH686_09465 0.88 +0.2
1,932,664 + +1.8
1,932,664 + -0.6
1,932,664 + -0.6
1,932,665 - -1.5
1,932,665 - +0.3
1,932,665 - -0.6
1,932,708 - OH686_09470 0.16 -0.3
1,932,708 - OH686_09470 0.16 +0.3
1,932,708 - OH686_09470 0.16 -1.6
1,932,948 - -0.7
1,932,967 - +0.2
1,932,996 - +0.3
1,932,996 - -0.2
1,932,996 - +0.6
1,933,007 - -0.5
1,933,007 - +0.2
1,933,025 + +0.2
1,933,025 + -0.7
1,933,026 - +0.9
1,933,044 + +2.2
1,933,045 - -1.4
1,933,054 + +0.2
1,933,200 + OH686_09475 0.19 +0.2
1,933,208 + OH686_09475 0.19 -0.1
1,933,209 - OH686_09475 0.20 -0.1
1,933,384 + OH686_09475 0.38 +0.2
1,933,384 + OH686_09475 0.38 -0.6
1,933,384 + OH686_09475 0.38 +1.2
1,933,384 + OH686_09475 0.38 +0.8
1,933,384 + OH686_09475 0.38 -1.4
1,933,385 - OH686_09475 0.38 -0.8
1,933,385 - OH686_09475 0.38 -0.6
1,933,385 - OH686_09475 0.38 +0.2
1,933,385 - OH686_09475 0.38 -0.4
1,933,385 - OH686_09475 0.38 +1.2
1,933,385 - OH686_09475 0.38 -0.8
1,933,385 - OH686_09475 0.38 +0.2
1,933,385 - OH686_09475 0.38 +0.2
1,933,385 - OH686_09475 0.38 +0.8
1,933,385 - OH686_09475 0.38 +0.2
1,933,386 + OH686_09475 0.38 +0.2
1,933,423 + OH686_09475 0.42 -0.1
1,933,424 - OH686_09475 0.42 -0.1
1,933,481 + OH686_09475 0.48 -0.8
1,933,481 + OH686_09475 0.48 +0.9
1,933,481 + OH686_09475 0.48 +0.9
1,933,481 + OH686_09475 0.48 +0.2
1,933,481 + OH686_09475 0.48 +0.2
1,933,482 - OH686_09475 0.48 -1.0
1,933,482 - OH686_09475 0.48 +0.2
1,933,482 - OH686_09475 0.48 +1.2
1,933,482 - OH686_09475 0.48 -0.1
1,933,640 - OH686_09475 0.64 +0.2
1,933,668 + OH686_09475 0.67 -1.1
1,933,668 + OH686_09475 0.67 -0.1
1,933,668 + OH686_09475 0.67 +0.2
1,933,668 + OH686_09475 0.67 -0.1
1,933,668 + OH686_09475 0.67 +0.2
1,933,668 + OH686_09475 0.67 +1.2
1,933,669 - OH686_09475 0.67 -0.1
1,933,669 - OH686_09475 0.67 -0.6
1,933,669 - OH686_09475 0.67 +0.2
1,933,671 + OH686_09475 0.67 -0.1
1,933,671 + OH686_09475 0.67 -0.6
1,933,672 - OH686_09475 0.67 -1.0
1,933,672 - OH686_09475 0.67 +0.2
1,933,767 + OH686_09475 0.77 +1.2
1,933,767 + OH686_09475 0.77 +0.2
1,933,768 - OH686_09475 0.77 -0.1
1,933,768 - OH686_09475 0.77 -0.4
1,934,229 + OH686_09480 0.12 +0.6
1,934,229 + OH686_09480 0.12 -2.6
1,934,229 + OH686_09480 0.12 -0.5
1,934,230 - OH686_09480 0.12 -0.6
1,934,230 - OH686_09480 0.12 +0.6
1,934,478 + OH686_09480 0.25 +0.1
1,934,478 + OH686_09480 0.25 -0.6
1,934,478 + OH686_09480 0.25 +0.5
1,934,478 + OH686_09480 0.25 +0.5
1,934,478 + OH686_09480 0.25 +0.0
1,934,478 + OH686_09480 0.25 -1.6
1,934,478 + OH686_09480 0.25 +0.5
1,934,478 + OH686_09480 0.25 +1.6
1,934,478 + OH686_09480 0.25 +1.1
1,934,479 - OH686_09480 0.25 +2.7
1,934,479 - OH686_09480 0.25 -1.3
1,934,479 - OH686_09480 0.25 +0.1
1,934,479 - OH686_09480 0.25 -0.2
1,934,479 - OH686_09480 0.25 +1.5
1,934,479 - OH686_09480 0.25 +0.4
1,934,479 - OH686_09480 0.25 -0.6
1,934,479 - OH686_09480 0.25 -1.7
1,934,479 - OH686_09480 0.25 -0.3
1,934,479 - OH686_09480 0.25 +0.4
1,934,479 - OH686_09480 0.25 +0.0
1,934,547 + OH686_09480 0.29 +0.5
1,934,547 + OH686_09480 0.29 +0.9
1,934,547 + OH686_09480 0.29 -1.0
1,934,547 + OH686_09480 0.29 -0.3
1,934,547 + OH686_09480 0.29 -1.0
1,934,547 + OH686_09480 0.29 -0.6
1,934,547 + OH686_09480 0.29 -0.8
1,934,547 + OH686_09480 0.29 +0.4
1,934,547 + OH686_09480 0.29 -0.8
1,934,547 + OH686_09480 0.29 +1.3
1,934,547 + OH686_09480 0.29 -0.6
1,934,547 + OH686_09480 0.29 +0.4
1,934,547 + OH686_09480 0.29 -0.9
1,934,547 + OH686_09480 0.29 +0.0
1,934,547 + OH686_09480 0.29 -0.3
1,934,547 + OH686_09480 0.29 +0.4
1,934,547 + OH686_09480 0.29 +0.6
1,934,547 + OH686_09480 0.29 -0.1
1,934,547 + OH686_09480 0.29 -0.1
1,934,548 - OH686_09480 0.29 +1.0
1,934,548 - OH686_09480 0.29 +1.0
1,934,548 - OH686_09480 0.29 +0.5
1,934,548 - OH686_09480 0.29 +0.2
1,934,548 - OH686_09480 0.29 +1.0
1,934,548 - OH686_09480 0.29 +0.2
1,934,548 - OH686_09480 0.29 -0.7
1,934,548 - OH686_09480 0.29 -0.1
1,934,548 - OH686_09480 0.29 +0.9
1,934,548 - OH686_09480 0.29 -0.1
1,934,548 - OH686_09480 0.29 -0.8
1,934,548 - OH686_09480 0.29 +0.3
1,934,548 - OH686_09480 0.29 +0.5
1,934,548 - OH686_09480 0.29 -0.0
1,934,548 - OH686_09480 0.29 +1.4
1,934,548 - OH686_09480 0.29 +1.4
1,934,548 - OH686_09480 0.29 +1.0
1,934,548 - OH686_09480 0.29 +0.2
1,934,548 - OH686_09480 0.29 +0.8
1,934,548 - OH686_09480 0.29 +0.3
1,934,548 - OH686_09480 0.29 -0.2
1,934,574 + OH686_09480 0.30 -0.2
1,934,649 + OH686_09480 0.34 +1.0
1,934,649 + OH686_09480 0.34 +0.1
1,934,659 - OH686_09480 0.35 -0.3
1,934,910 + OH686_09480 0.48 -0.6

Or see this region's nucleotide sequence