Strain Fitness in Pseudomonas sp. S08-1 around OH686_08115

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_08110 and OH686_08115 are separated by 157 nucleotidesOH686_08115 and OH686_08120 are separated by 125 nucleotides OH686_08110: OH686_08110 - CDP-diacylglycerol-serine O-phosphatidyltransferase, at 1,651,006 to 1,651,821 _08110 OH686_08115: OH686_08115 - ketol-acid reductoisomerase, at 1,651,979 to 1,652,995 _08115 OH686_08120: OH686_08120 - Transcriptional regulator IlvY, LysR family, at 1,653,121 to 1,654,002 _08120 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -3 -2 -1 0 1at 1650.979 kb on - strandat 1651.003 kb on - strandat 1651.908 kb on + strandat 1651.908 kb on + strandat 1651.908 kb on + strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.910 kb on + strandat 1651.911 kb on - strandat 1651.911 kb on - strandat 1651.911 kb on - strandat 1651.932 kb on + strandat 1651.933 kb on - strandat 1652.103 kb on + strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.139 kb on + strand, within OH686_08115at 1652.139 kb on + strand, within OH686_08115at 1652.139 kb on + strand, within OH686_08115at 1652.140 kb on - strand, within OH686_08115at 1652.140 kb on - strand, within OH686_08115at 1652.140 kb on - strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.221 kb on - strand, within OH686_08115at 1652.221 kb on - strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.343 kb on + strand, within OH686_08115at 1652.344 kb on - strand, within OH686_08115at 1652.496 kb on + strand, within OH686_08115at 1652.538 kb on + strand, within OH686_08115at 1652.538 kb on + strand, within OH686_08115at 1652.538 kb on + strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.730 kb on + strand, within OH686_08115at 1652.730 kb on + strand, within OH686_08115at 1652.730 kb on + strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.983 kb on - strandat 1653.054 kb on + strandat 1653.054 kb on + strandat 1653.054 kb on + strandat 1653.054 kb on + strandat 1653.054 kb on + strandat 1653.055 kb on - strandat 1653.055 kb on - strandat 1653.055 kb on - strandat 1653.055 kb on - strandat 1653.055 kb on - strandat 1653.055 kb on - strandat 1653.055 kb on - strandat 1653.075 kb on + strandat 1653.085 kb on + strandat 1653.085 kb on + strandat 1653.086 kb on - strandat 1653.086 kb on - strandat 1653.086 kb on - strandat 1653.094 kb on + strandat 1653.094 kb on + strandat 1653.095 kb on - strandat 1653.177 kb on + strandat 1653.178 kb on - strandat 1653.319 kb on + strand, within OH686_08120at 1653.406 kb on + strand, within OH686_08120at 1653.406 kb on + strand, within OH686_08120at 1653.406 kb on + strand, within OH686_08120at 1653.406 kb on + strand, within OH686_08120at 1653.406 kb on + strand, within OH686_08120at 1653.407 kb on - strand, within OH686_08120at 1653.407 kb on - strand, within OH686_08120at 1653.407 kb on - strand, within OH686_08120at 1653.407 kb on - strand, within OH686_08120at 1653.407 kb on - strand, within OH686_08120at 1653.427 kb on + strand, within OH686_08120at 1653.427 kb on + strand, within OH686_08120at 1653.427 kb on + strand, within OH686_08120at 1653.427 kb on + strand, within OH686_08120at 1653.428 kb on - strand, within OH686_08120at 1653.428 kb on - strand, within OH686_08120at 1653.428 kb on - strand, within OH686_08120at 1653.428 kb on - strand, within OH686_08120at 1653.428 kb on - strand, within OH686_08120at 1653.428 kb on - strand, within OH686_08120at 1653.439 kb on + strand, within OH686_08120at 1653.439 kb on + strand, within OH686_08120at 1653.440 kb on - strand, within OH686_08120at 1653.440 kb on - strand, within OH686_08120at 1653.440 kb on - strand, within OH686_08120at 1653.469 kb on + strand, within OH686_08120at 1653.647 kb on + strand, within OH686_08120at 1653.647 kb on + strand, within OH686_08120at 1653.648 kb on - strand, within OH686_08120at 1653.648 kb on - strand, within OH686_08120at 1653.698 kb on + strand, within OH686_08120at 1653.698 kb on + strand, within OH686_08120at 1653.698 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.781 kb on + strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.782 kb on - strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.898 kb on + strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.899 kb on - strand, within OH686_08120at 1653.926 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
1,650,979 - +0.2
1,651,003 - -0.2
1,651,908 + +1.2
1,651,908 + -0.5
1,651,908 + -1.3
1,651,909 - -0.1
1,651,909 - +0.4
1,651,909 - +1.3
1,651,909 - +0.0
1,651,909 - -1.1
1,651,910 + +0.1
1,651,911 - +0.3
1,651,911 - -1.3
1,651,911 - -0.7
1,651,932 + -1.3
1,651,933 - -1.7
1,652,103 + OH686_08115 0.12 -0.1
1,652,104 - OH686_08115 0.12 -3.1
1,652,104 - OH686_08115 0.12 -1.1
1,652,104 - OH686_08115 0.12 -0.8
1,652,104 - OH686_08115 0.12 -1.7
1,652,104 - OH686_08115 0.12 -1.4
1,652,104 - OH686_08115 0.12 -2.0
1,652,139 + OH686_08115 0.16 -1.4
1,652,139 + OH686_08115 0.16 -1.7
1,652,139 + OH686_08115 0.16 -0.1
1,652,140 - OH686_08115 0.16 -1.6
1,652,140 - OH686_08115 0.16 -1.4
1,652,140 - OH686_08115 0.16 -1.0
1,652,220 + OH686_08115 0.24 -1.3
1,652,220 + OH686_08115 0.24 -1.6
1,652,220 + OH686_08115 0.24 -1.9
1,652,220 + OH686_08115 0.24 -1.4
1,652,220 + OH686_08115 0.24 -1.6
1,652,220 + OH686_08115 0.24 -0.8
1,652,221 - OH686_08115 0.24 -2.9
1,652,221 - OH686_08115 0.24 -1.0
1,652,325 + OH686_08115 0.34 +0.9
1,652,325 + OH686_08115 0.34 -0.6
1,652,325 + OH686_08115 0.34 -0.9
1,652,325 + OH686_08115 0.34 +0.2
1,652,343 + OH686_08115 0.36 -1.1
1,652,344 - OH686_08115 0.36 -2.4
1,652,496 + OH686_08115 0.51 -1.8
1,652,538 + OH686_08115 0.55 -0.8
1,652,538 + OH686_08115 0.55 -3.0
1,652,538 + OH686_08115 0.55 -1.8
1,652,539 - OH686_08115 0.55 +0.2
1,652,539 - OH686_08115 0.55 -2.0
1,652,539 - OH686_08115 0.55 -2.3
1,652,539 - OH686_08115 0.55 +0.0
1,652,658 + OH686_08115 0.67 -1.7
1,652,658 + OH686_08115 0.67 -0.4
1,652,658 + OH686_08115 0.67 -2.1
1,652,658 + OH686_08115 0.67 -1.1
1,652,658 + OH686_08115 0.67 -1.9
1,652,659 - OH686_08115 0.67 -0.6
1,652,659 - OH686_08115 0.67 -2.1
1,652,659 - OH686_08115 0.67 -1.4
1,652,659 - OH686_08115 0.67 -0.6
1,652,659 - OH686_08115 0.67 -1.1
1,652,730 + OH686_08115 0.74 -1.9
1,652,730 + OH686_08115 0.74 +0.6
1,652,730 + OH686_08115 0.74 -1.0
1,652,731 - OH686_08115 0.74 -1.6
1,652,731 - OH686_08115 0.74 -3.0
1,652,731 - OH686_08115 0.74 -2.4
1,652,731 - OH686_08115 0.74 -0.8
1,652,731 - OH686_08115 0.74 -1.9
1,652,731 - OH686_08115 0.74 -1.1
1,652,731 - OH686_08115 0.74 -2.5
1,652,731 - OH686_08115 0.74 -2.7
1,652,731 - OH686_08115 0.74 -2.2
1,652,731 - OH686_08115 0.74 -2.1
1,652,731 - OH686_08115 0.74 -0.3
1,652,731 - OH686_08115 0.74 -2.5
1,652,731 - OH686_08115 0.74 +0.2
1,652,983 - -3.7
1,653,054 + -1.7
1,653,054 + -0.7
1,653,054 + -0.6
1,653,054 + -2.0
1,653,054 + -2.2
1,653,055 - +1.0
1,653,055 - -0.2
1,653,055 - +0.8
1,653,055 - -1.0
1,653,055 - +0.6
1,653,055 - +0.6
1,653,055 - -1.1
1,653,075 + -3.4
1,653,085 + +0.0
1,653,085 + -2.2
1,653,086 - +0.2
1,653,086 - +0.7
1,653,086 - -0.5
1,653,094 + -1.2
1,653,094 + -1.1
1,653,095 - +0.4
1,653,177 + -0.1
1,653,178 - -0.9
1,653,319 + OH686_08120 0.22 +1.0
1,653,406 + OH686_08120 0.32 -0.7
1,653,406 + OH686_08120 0.32 -0.7
1,653,406 + OH686_08120 0.32 -0.3
1,653,406 + OH686_08120 0.32 -1.3
1,653,406 + OH686_08120 0.32 -0.5
1,653,407 - OH686_08120 0.32 -0.3
1,653,407 - OH686_08120 0.32 +0.4
1,653,407 - OH686_08120 0.32 -1.4
1,653,407 - OH686_08120 0.32 -1.0
1,653,407 - OH686_08120 0.32 -1.0
1,653,427 + OH686_08120 0.35 +0.8
1,653,427 + OH686_08120 0.35 +0.1
1,653,427 + OH686_08120 0.35 -1.4
1,653,427 + OH686_08120 0.35 +0.4
1,653,428 - OH686_08120 0.35 -0.1
1,653,428 - OH686_08120 0.35 -0.4
1,653,428 - OH686_08120 0.35 +0.1
1,653,428 - OH686_08120 0.35 -0.7
1,653,428 - OH686_08120 0.35 -0.5
1,653,428 - OH686_08120 0.35 -1.5
1,653,439 + OH686_08120 0.36 -0.2
1,653,439 + OH686_08120 0.36 -1.0
1,653,440 - OH686_08120 0.36 +1.5
1,653,440 - OH686_08120 0.36 +1.3
1,653,440 - OH686_08120 0.36 +0.1
1,653,469 + OH686_08120 0.39 -0.6
1,653,647 + OH686_08120 0.60 -0.8
1,653,647 + OH686_08120 0.60 -1.1
1,653,648 - OH686_08120 0.60 +0.2
1,653,648 - OH686_08120 0.60 -0.7
1,653,698 + OH686_08120 0.65 -0.2
1,653,698 + OH686_08120 0.65 -1.4
1,653,698 + OH686_08120 0.65 -0.2
1,653,781 + OH686_08120 0.75 +0.1
1,653,781 + OH686_08120 0.75 -0.4
1,653,781 + OH686_08120 0.75 -0.4
1,653,781 + OH686_08120 0.75 -0.4
1,653,781 + OH686_08120 0.75 +0.6
1,653,781 + OH686_08120 0.75 -3.5
1,653,781 + OH686_08120 0.75 -1.4
1,653,781 + OH686_08120 0.75 +0.3
1,653,781 + OH686_08120 0.75 -0.1
1,653,781 + OH686_08120 0.75 -0.5
1,653,781 + OH686_08120 0.75 -1.6
1,653,781 + OH686_08120 0.75 -2.3
1,653,781 + OH686_08120 0.75 -1.0
1,653,782 - OH686_08120 0.75 -0.6
1,653,782 - OH686_08120 0.75 -0.7
1,653,782 - OH686_08120 0.75 +0.4
1,653,782 - OH686_08120 0.75 +0.8
1,653,782 - OH686_08120 0.75 -0.6
1,653,782 - OH686_08120 0.75 +0.2
1,653,782 - OH686_08120 0.75 -1.2
1,653,782 - OH686_08120 0.75 -0.5
1,653,782 - OH686_08120 0.75 -0.3
1,653,782 - OH686_08120 0.75 +1.2
1,653,782 - OH686_08120 0.75 -1.4
1,653,782 - OH686_08120 0.75 -0.5
1,653,782 - OH686_08120 0.75 +0.4
1,653,782 - OH686_08120 0.75 -1.6
1,653,782 - OH686_08120 0.75 -1.1
1,653,782 - OH686_08120 0.75 +0.7
1,653,898 + OH686_08120 0.88 -0.2
1,653,898 + OH686_08120 0.88 +1.2
1,653,898 + OH686_08120 0.88 +0.6
1,653,898 + OH686_08120 0.88 +0.6
1,653,898 + OH686_08120 0.88 -1.3
1,653,898 + OH686_08120 0.88 -0.0
1,653,898 + OH686_08120 0.88 +0.4
1,653,898 + OH686_08120 0.88 -0.3
1,653,898 + OH686_08120 0.88 -0.2
1,653,898 + OH686_08120 0.88 -1.9
1,653,898 + OH686_08120 0.88 -0.4
1,653,898 + OH686_08120 0.88 -0.3
1,653,898 + OH686_08120 0.88 -1.1
1,653,898 + OH686_08120 0.88 -0.7
1,653,898 + OH686_08120 0.88 -0.1
1,653,899 - OH686_08120 0.88 +0.2
1,653,899 - OH686_08120 0.88 +0.4
1,653,899 - OH686_08120 0.88 +0.6
1,653,899 - OH686_08120 0.88 +0.9
1,653,899 - OH686_08120 0.88 -0.4
1,653,899 - OH686_08120 0.88 -2.3
1,653,899 - OH686_08120 0.88 +0.1
1,653,899 - OH686_08120 0.88 +1.2
1,653,899 - OH686_08120 0.88 -0.1
1,653,899 - OH686_08120 0.88 -0.3
1,653,899 - OH686_08120 0.88 -0.8
1,653,899 - OH686_08120 0.88 +0.8
1,653,926 - -0.7

Or see this region's nucleotide sequence