Strain Fitness in Pseudomonas sp. S08-1 around OH686_07035

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07025 and OH686_07030 are separated by 55 nucleotidesOH686_07030 and OH686_07035 are separated by 4 nucleotidesOH686_07035 and OH686_07040 overlap by 4 nucleotides OH686_07025: OH686_07025 - Glycine/D-amino acid (deaminating), at 1,437,286 to 1,438,419 _07025 OH686_07030: OH686_07030 - YheO-like PAS domain, at 1,438,475 to 1,439,104 _07030 OH686_07035: OH686_07035 - hypothetical protein, at 1,439,109 to 1,439,993 _07035 OH686_07040: OH686_07040 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 1,439,990 to 1,441,324 _07040 Position (kb) 1439 1440Strain fitness (log2 ratio) -2 -1 0 1 2at 1438.191 kb on + strand, within OH686_07025at 1438.191 kb on + strand, within OH686_07025at 1438.192 kb on - strand, within OH686_07025at 1438.243 kb on + strand, within OH686_07025at 1438.291 kb on + strand, within OH686_07025at 1438.350 kb on - strandat 1438.350 kb on - strandat 1438.350 kb on - strandat 1438.597 kb on + strand, within OH686_07030at 1438.692 kb on - strand, within OH686_07030at 1438.792 kb on + strand, within OH686_07030at 1438.793 kb on - strand, within OH686_07030at 1438.793 kb on - strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.030 kb on + strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.031 kb on - strand, within OH686_07030at 1439.069 kb on + strandat 1439.069 kb on + strandat 1439.069 kb on + strandat 1439.069 kb on + strandat 1439.069 kb on + strandat 1439.069 kb on + strandat 1439.070 kb on - strandat 1439.070 kb on - strandat 1439.070 kb on - strandat 1439.070 kb on - strandat 1439.123 kb on - strandat 1439.123 kb on - strandat 1439.167 kb on + strandat 1439.167 kb on + strandat 1439.168 kb on - strandat 1439.168 kb on - strandat 1439.176 kb on + strandat 1439.177 kb on - strandat 1439.203 kb on + strand, within OH686_07035at 1439.203 kb on + strand, within OH686_07035at 1439.414 kb on - strand, within OH686_07035at 1440.045 kb on + strandat 1440.045 kb on + strandat 1440.045 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.056 kb on + strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.060 kb on + strandat 1440.060 kb on + strandat 1440.061 kb on - strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.114 kb on + strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.115 kb on - strandat 1440.116 kb on + strandat 1440.116 kb on + strandat 1440.116 kb on + strandat 1440.116 kb on + strandat 1440.116 kb on + strandat 1440.116 kb on + strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.117 kb on - strandat 1440.123 kb on + strandat 1440.123 kb on + strandat 1440.123 kb on + strandat 1440.124 kb on - strand, within OH686_07040at 1440.132 kb on + strand, within OH686_07040at 1440.168 kb on + strand, within OH686_07040at 1440.169 kb on - strand, within OH686_07040at 1440.234 kb on + strand, within OH686_07040at 1440.234 kb on + strand, within OH686_07040at 1440.234 kb on + strand, within OH686_07040at 1440.234 kb on + strand, within OH686_07040at 1440.234 kb on + strand, within OH686_07040at 1440.531 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.581 kb on + strand, within OH686_07040at 1440.582 kb on - strand, within OH686_07040at 1440.582 kb on - strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.608 kb on + strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.609 kb on - strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.612 kb on + strand, within OH686_07040at 1440.613 kb on - strand, within OH686_07040at 1440.613 kb on - strand, within OH686_07040at 1440.613 kb on - strand, within OH686_07040at 1440.613 kb on - strand, within OH686_07040at 1440.613 kb on - strand, within OH686_07040at 1440.613 kb on - strand, within OH686_07040

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,438,191 + OH686_07025 0.80 -1.0
1,438,191 + OH686_07025 0.80 -0.5
1,438,192 - OH686_07025 0.80 -0.1
1,438,243 + OH686_07025 0.84 +0.1
1,438,291 + OH686_07025 0.89 +0.4
1,438,350 - +0.4
1,438,350 - +0.2
1,438,350 - +0.5
1,438,597 + OH686_07030 0.19 +0.3
1,438,692 - OH686_07030 0.34 -0.6
1,438,792 + OH686_07030 0.50 +0.1
1,438,793 - OH686_07030 0.50 +0.8
1,438,793 - OH686_07030 0.50 -0.6
1,439,030 + OH686_07030 0.88 -0.3
1,439,030 + OH686_07030 0.88 +0.0
1,439,030 + OH686_07030 0.88 -0.9
1,439,030 + OH686_07030 0.88 +0.5
1,439,030 + OH686_07030 0.88 +0.2
1,439,030 + OH686_07030 0.88 -0.3
1,439,030 + OH686_07030 0.88 +0.0
1,439,030 + OH686_07030 0.88 -0.3
1,439,030 + OH686_07030 0.88 -0.1
1,439,030 + OH686_07030 0.88 +0.2
1,439,030 + OH686_07030 0.88 -1.0
1,439,030 + OH686_07030 0.88 +1.9
1,439,030 + OH686_07030 0.88 +0.1
1,439,030 + OH686_07030 0.88 +0.0
1,439,030 + OH686_07030 0.88 -1.3
1,439,030 + OH686_07030 0.88 -1.1
1,439,030 + OH686_07030 0.88 +0.7
1,439,030 + OH686_07030 0.88 +0.0
1,439,030 + OH686_07030 0.88 -0.3
1,439,030 + OH686_07030 0.88 -0.8
1,439,030 + OH686_07030 0.88 +0.3
1,439,030 + OH686_07030 0.88 -0.3
1,439,031 - OH686_07030 0.88 +0.2
1,439,031 - OH686_07030 0.88 -0.4
1,439,031 - OH686_07030 0.88 -0.3
1,439,031 - OH686_07030 0.88 +0.4
1,439,031 - OH686_07030 0.88 +1.6
1,439,031 - OH686_07030 0.88 +0.5
1,439,031 - OH686_07030 0.88 -0.2
1,439,031 - OH686_07030 0.88 +0.2
1,439,031 - OH686_07030 0.88 -1.2
1,439,031 - OH686_07030 0.88 -0.1
1,439,031 - OH686_07030 0.88 +0.8
1,439,031 - OH686_07030 0.88 -0.6
1,439,031 - OH686_07030 0.88 -0.1
1,439,031 - OH686_07030 0.88 +0.1
1,439,069 + +0.0
1,439,069 + -0.5
1,439,069 + +0.5
1,439,069 + +0.1
1,439,069 + +0.7
1,439,069 + -1.8
1,439,070 - -0.4
1,439,070 - -0.3
1,439,070 - -0.8
1,439,070 - +0.5
1,439,123 - -0.5
1,439,123 - -2.1
1,439,167 + -0.1
1,439,167 + +0.8
1,439,168 - -0.4
1,439,168 - -1.6
1,439,176 + -0.1
1,439,177 - +0.6
1,439,203 + OH686_07035 0.11 +0.1
1,439,203 + OH686_07035 0.11 -1.3
1,439,414 - OH686_07035 0.34 -1.0
1,440,045 + -0.2
1,440,045 + +0.4
1,440,045 + +2.4
1,440,056 + +0.0
1,440,056 + +0.5
1,440,056 + +0.8
1,440,056 + -0.0
1,440,056 + -1.0
1,440,056 + +0.3
1,440,056 + -0.5
1,440,056 + -1.2
1,440,056 + -0.6
1,440,056 + -0.2
1,440,056 + -0.2
1,440,056 + +0.4
1,440,056 + -0.7
1,440,056 + -0.1
1,440,057 - -0.4
1,440,057 - -0.0
1,440,057 - -0.9
1,440,057 - -0.4
1,440,057 - -0.5
1,440,057 - +0.5
1,440,057 - -0.8
1,440,057 - -0.7
1,440,057 - +0.8
1,440,057 - -0.4
1,440,060 + +0.3
1,440,060 + +0.0
1,440,061 - +1.6
1,440,114 + +0.1
1,440,114 + +0.5
1,440,114 + +0.1
1,440,114 + +0.3
1,440,114 + -0.4
1,440,114 + -0.3
1,440,114 + +0.1
1,440,114 + -0.4
1,440,114 + +0.5
1,440,114 + -0.3
1,440,114 + -1.1
1,440,114 + -0.0
1,440,115 - +1.5
1,440,115 - -2.0
1,440,115 - -1.2
1,440,115 - +1.3
1,440,115 - -0.2
1,440,115 - +0.5
1,440,115 - +0.0
1,440,115 - +0.3
1,440,116 + -0.4
1,440,116 + +0.2
1,440,116 + -0.6
1,440,116 + -1.6
1,440,116 + +0.4
1,440,116 + -0.2
1,440,117 - +0.8
1,440,117 - -0.1
1,440,117 - -0.2
1,440,117 - -0.2
1,440,117 - -0.1
1,440,117 - +0.4
1,440,117 - -0.1
1,440,117 - -0.7
1,440,117 - +0.3
1,440,117 - -0.6
1,440,117 - -0.5
1,440,123 + -0.7
1,440,123 + +1.0
1,440,123 + -1.0
1,440,124 - OH686_07040 0.10 -0.4
1,440,132 + OH686_07040 0.11 +1.3
1,440,168 + OH686_07040 0.13 -0.0
1,440,169 - OH686_07040 0.13 +0.2
1,440,234 + OH686_07040 0.18 -0.6
1,440,234 + OH686_07040 0.18 -1.0
1,440,234 + OH686_07040 0.18 -0.3
1,440,234 + OH686_07040 0.18 +0.8
1,440,234 + OH686_07040 0.18 -0.6
1,440,531 + OH686_07040 0.41 -0.9
1,440,581 + OH686_07040 0.44 +0.1
1,440,581 + OH686_07040 0.44 -0.8
1,440,581 + OH686_07040 0.44 +0.0
1,440,581 + OH686_07040 0.44 +0.3
1,440,581 + OH686_07040 0.44 +1.8
1,440,581 + OH686_07040 0.44 -0.3
1,440,581 + OH686_07040 0.44 +0.7
1,440,582 - OH686_07040 0.44 -1.6
1,440,582 - OH686_07040 0.44 -0.8
1,440,608 + OH686_07040 0.46 +0.7
1,440,608 + OH686_07040 0.46 -1.0
1,440,608 + OH686_07040 0.46 +0.0
1,440,608 + OH686_07040 0.46 -1.7
1,440,608 + OH686_07040 0.46 -1.6
1,440,608 + OH686_07040 0.46 -0.6
1,440,608 + OH686_07040 0.46 -0.0
1,440,608 + OH686_07040 0.46 +1.1
1,440,608 + OH686_07040 0.46 +0.2
1,440,608 + OH686_07040 0.46 -0.5
1,440,608 + OH686_07040 0.46 -0.6
1,440,608 + OH686_07040 0.46 +0.5
1,440,608 + OH686_07040 0.46 +0.4
1,440,608 + OH686_07040 0.46 -0.3
1,440,609 - OH686_07040 0.46 -0.5
1,440,609 - OH686_07040 0.46 +1.7
1,440,609 - OH686_07040 0.46 +0.5
1,440,609 - OH686_07040 0.46 +0.1
1,440,609 - OH686_07040 0.46 +0.4
1,440,609 - OH686_07040 0.46 -0.8
1,440,609 - OH686_07040 0.46 -0.9
1,440,609 - OH686_07040 0.46 +0.1
1,440,609 - OH686_07040 0.46 +0.5
1,440,609 - OH686_07040 0.46 +0.9
1,440,612 + OH686_07040 0.47 -0.6
1,440,612 + OH686_07040 0.47 +0.0
1,440,612 + OH686_07040 0.47 +1.2
1,440,612 + OH686_07040 0.47 +0.3
1,440,612 + OH686_07040 0.47 -0.3
1,440,612 + OH686_07040 0.47 +0.2
1,440,612 + OH686_07040 0.47 +0.3
1,440,612 + OH686_07040 0.47 +0.4
1,440,612 + OH686_07040 0.47 +0.3
1,440,612 + OH686_07040 0.47 -2.0
1,440,613 - OH686_07040 0.47 -0.7
1,440,613 - OH686_07040 0.47 -0.1
1,440,613 - OH686_07040 0.47 -1.6
1,440,613 - OH686_07040 0.47 -1.3
1,440,613 - OH686_07040 0.47 -0.2
1,440,613 - OH686_07040 0.47 -0.4

Or see this region's nucleotide sequence