Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_04470 and OH686_04475 are separated by 13 nucleotides OH686_04475 and OH686_04480 are separated by 11 nucleotides OH686_04480 and OH686_04485 are separated by 174 nucleotides
OH686_04470: OH686_04470 - 3-isopropylmalate dehydrogenase, at 931,396 to 932,478
_04470
OH686_04475: OH686_04475 - 3-isopropylmalate dehydratase small subunit , at 932,492 to 933,139
_04475
OH686_04480: OH686_04480 - 3-isopropylmalate dehydratase large subunit , at 933,151 to 934,578
_04480
OH686_04485: OH686_04485 - Transcriptional regulator, LysR family, at 934,753 to 935,631
_04485
Position (kb) 933
934
935 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 932.273 kb on - strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.327 kb on + strand, within OH686_04470 at 932.328 kb on - strand, within OH686_04470 at 932.328 kb on - strand, within OH686_04470 at 932.328 kb on - strand, within OH686_04470 at 932.328 kb on - strand, within OH686_04470 at 932.328 kb on - strand, within OH686_04470 at 932.384 kb on + strand at 932.384 kb on + strand at 932.384 kb on + strand at 932.384 kb on + strand at 932.384 kb on + strand at 932.385 kb on - strand at 932.385 kb on - strand at 932.385 kb on - strand at 932.385 kb on - strand at 932.385 kb on - strand at 932.490 kb on - strand at 932.640 kb on + strand, within OH686_04475 at 932.640 kb on + strand, within OH686_04475 at 932.640 kb on + strand, within OH686_04475 at 932.641 kb on - strand, within OH686_04475 at 932.641 kb on - strand, within OH686_04475 at 932.641 kb on - strand, within OH686_04475 at 932.641 kb on - strand, within OH686_04475 at 932.641 kb on - strand, within OH686_04475 at 932.805 kb on + strand, within OH686_04475 at 932.805 kb on + strand, within OH686_04475 at 932.805 kb on + strand, within OH686_04475 at 932.805 kb on + strand, within OH686_04475 at 932.806 kb on - strand, within OH686_04475 at 932.806 kb on - strand, within OH686_04475 at 932.806 kb on - strand, within OH686_04475 at 932.806 kb on - strand, within OH686_04475 at 932.835 kb on + strand, within OH686_04475 at 932.836 kb on - strand, within OH686_04475 at 932.836 kb on - strand, within OH686_04475 at 933.127 kb on + strand at 933.144 kb on + strand at 933.144 kb on + strand at 933.144 kb on + strand at 933.144 kb on + strand at 933.144 kb on + strand at 933.145 kb on - strand at 933.145 kb on - strand at 933.145 kb on - strand at 933.181 kb on - strand at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.587 kb on + strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.588 kb on - strand, within OH686_04480 at 933.836 kb on + strand, within OH686_04480 at 933.836 kb on + strand, within OH686_04480 at 933.836 kb on + strand, within OH686_04480 at 933.836 kb on + strand, within OH686_04480 at 933.836 kb on + strand, within OH686_04480 at 933.837 kb on - strand, within OH686_04480 at 933.837 kb on - strand, within OH686_04480 at 933.837 kb on - strand, within OH686_04480 at 933.837 kb on - strand, within OH686_04480 at 933.837 kb on - strand, within OH686_04480 at 933.837 kb on - strand, within OH686_04480 at 934.164 kb on + strand, within OH686_04480 at 934.312 kb on + strand, within OH686_04480 at 934.313 kb on - strand, within OH686_04480 at 934.404 kb on + strand, within OH686_04480 at 934.499 kb on + strand at 934.499 kb on + strand at 934.499 kb on + strand at 934.499 kb on + strand at 934.500 kb on - strand at 934.500 kb on - strand at 934.500 kb on - strand at 934.500 kb on - strand at 934.500 kb on - strand at 934.500 kb on - strand at 934.531 kb on + strand at 934.531 kb on + strand at 934.531 kb on + strand at 934.531 kb on + strand at 934.542 kb on + strand at 934.543 kb on - strand at 934.543 kb on - strand at 934.543 kb on - strand at 934.559 kb on + strand at 934.560 kb on - strand at 934.560 kb on - strand at 934.560 kb on - strand at 934.560 kb on - strand at 934.560 kb on - strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.583 kb on + strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.584 kb on - strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.619 kb on + strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.620 kb on - strand at 934.621 kb on + strand at 934.621 kb on + strand at 934.621 kb on + strand at 934.621 kb on + strand at 934.622 kb on - strand at 934.622 kb on - strand at 934.622 kb on - strand at 934.647 kb on + strand at 934.665 kb on - strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.720 kb on + strand at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.886 kb on + strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.887 kb on - strand, within OH686_04485 at 934.958 kb on - strand, within OH686_04485 at 934.974 kb on - strand, within OH686_04485 at 935.053 kb on - strand, within OH686_04485 at 935.101 kb on + strand, within OH686_04485 at 935.101 kb on + strand, within OH686_04485 at 935.102 kb on - strand, within OH686_04485 at 935.149 kb on + strand, within OH686_04485 at 935.149 kb on + strand, within OH686_04485 at 935.149 kb on + strand, within OH686_04485 at 935.149 kb on + strand, within OH686_04485 at 935.150 kb on - strand, within OH686_04485 at 935.346 kb on + strand, within OH686_04485 at 935.347 kb on - strand, within OH686_04485 at 935.361 kb on + strand, within OH686_04485 at 935.361 kb on + strand, within OH686_04485 at 935.362 kb on - strand, within OH686_04485 at 935.362 kb on - strand, within OH686_04485 at 935.422 kb on + strand, within OH686_04485 at 935.422 kb on + strand, within OH686_04485 at 935.422 kb on + strand, within OH686_04485 at 935.422 kb on + strand, within OH686_04485 at 935.422 kb on + strand, within OH686_04485 at 935.423 kb on - strand, within OH686_04485 at 935.423 kb on - strand, within OH686_04485 at 935.423 kb on - strand, within OH686_04485 at 935.423 kb on - strand, within OH686_04485 at 935.423 kb on - strand, within OH686_04485 at 935.423 kb on - strand, within OH686_04485 at 935.548 kb on + strand at 935.548 kb on + strand at 935.549 kb on - strand at 935.549 kb on - strand at 935.549 kb on - strand at 935.549 kb on - strand at 935.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 932,273 - OH686_04470 0.81 -0.1 932,327 + OH686_04470 0.86 -0.9 932,327 + OH686_04470 0.86 -1.5 932,327 + OH686_04470 0.86 -1.6 932,327 + OH686_04470 0.86 -3.1 932,327 + OH686_04470 0.86 -1.8 932,327 + OH686_04470 0.86 -0.9 932,327 + OH686_04470 0.86 -2.4 932,327 + OH686_04470 0.86 -2.5 932,327 + OH686_04470 0.86 -2.8 932,328 - OH686_04470 0.86 -0.7 932,328 - OH686_04470 0.86 -2.8 932,328 - OH686_04470 0.86 -1.1 932,328 - OH686_04470 0.86 -3.6 932,328 - OH686_04470 0.86 -1.9 932,384 + -1.3 932,384 + -3.2 932,384 + -2.4 932,384 + -2.4 932,384 + -2.1 932,385 - -3.8 932,385 - -1.6 932,385 - -0.5 932,385 - -2.9 932,385 - -1.3 932,490 - +0.1 932,640 + OH686_04475 0.23 -2.4 932,640 + OH686_04475 0.23 -2.8 932,640 + OH686_04475 0.23 -2.4 932,641 - OH686_04475 0.23 -1.8 932,641 - OH686_04475 0.23 -2.9 932,641 - OH686_04475 0.23 -0.1 932,641 - OH686_04475 0.23 -2.6 932,641 - OH686_04475 0.23 -2.0 932,805 + OH686_04475 0.48 -2.8 932,805 + OH686_04475 0.48 +0.5 932,805 + OH686_04475 0.48 -1.5 932,805 + OH686_04475 0.48 -3.0 932,806 - OH686_04475 0.48 -2.9 932,806 - OH686_04475 0.48 -2.3 932,806 - OH686_04475 0.48 -1.2 932,806 - OH686_04475 0.48 -2.1 932,835 + OH686_04475 0.53 -3.1 932,836 - OH686_04475 0.53 -1.0 932,836 - OH686_04475 0.53 -3.0 933,127 + +0.1 933,144 + -0.7 933,144 + -2.4 933,144 + -1.9 933,144 + -2.5 933,144 + -2.0 933,145 - +0.4 933,145 - +0.1 933,145 - +1.6 933,181 - -0.7 933,587 + OH686_04480 0.31 -3.1 933,587 + OH686_04480 0.31 -1.8 933,587 + OH686_04480 0.31 -3.5 933,587 + OH686_04480 0.31 -2.5 933,587 + OH686_04480 0.31 -2.6 933,587 + OH686_04480 0.31 -3.2 933,587 + OH686_04480 0.31 -2.5 933,587 + OH686_04480 0.31 -1.5 933,587 + OH686_04480 0.31 -1.1 933,587 + OH686_04480 0.31 -1.6 933,587 + OH686_04480 0.31 -1.2 933,587 + OH686_04480 0.31 -3.2 933,587 + OH686_04480 0.31 -2.6 933,587 + OH686_04480 0.31 -1.7 933,587 + OH686_04480 0.31 -1.9 933,587 + OH686_04480 0.31 -0.7 933,588 - OH686_04480 0.31 -2.0 933,588 - OH686_04480 0.31 -0.2 933,588 - OH686_04480 0.31 -2.5 933,588 - OH686_04480 0.31 -2.1 933,588 - OH686_04480 0.31 -0.9 933,588 - OH686_04480 0.31 -1.4 933,588 - OH686_04480 0.31 +0.1 933,588 - OH686_04480 0.31 -0.3 933,588 - OH686_04480 0.31 -3.1 933,836 + OH686_04480 0.48 -1.9 933,836 + OH686_04480 0.48 -2.4 933,836 + OH686_04480 0.48 -0.7 933,836 + OH686_04480 0.48 -3.2 933,836 + OH686_04480 0.48 -1.1 933,837 - OH686_04480 0.48 -2.5 933,837 - OH686_04480 0.48 -3.2 933,837 - OH686_04480 0.48 -3.9 933,837 - OH686_04480 0.48 -2.4 933,837 - OH686_04480 0.48 -2.5 933,837 - OH686_04480 0.48 -3.6 934,164 + OH686_04480 0.71 -0.2 934,312 + OH686_04480 0.81 -1.7 934,313 - OH686_04480 0.81 -3.1 934,404 + OH686_04480 0.88 -2.2 934,499 + -1.5 934,499 + -1.7 934,499 + -2.7 934,499 + -2.8 934,500 - -2.9 934,500 - -1.7 934,500 - -3.2 934,500 - -1.2 934,500 - -1.6 934,500 - -2.2 934,531 + -1.9 934,531 + -2.5 934,531 + -2.1 934,531 + -0.2 934,542 + -1.5 934,543 - -0.8 934,543 - -1.1 934,543 - -4.1 934,559 + -0.9 934,560 - -2.7 934,560 - -2.6 934,560 - -2.8 934,560 - -2.0 934,560 - -2.1 934,583 + -3.2 934,583 + -3.3 934,583 + -3.1 934,583 + -0.7 934,583 + -2.6 934,583 + -1.2 934,583 + -1.7 934,583 + -3.0 934,583 + -1.8 934,583 + -0.9 934,583 + -3.3 934,583 + -2.9 934,584 - -1.9 934,584 - +0.5 934,584 - -2.1 934,584 - -1.4 934,584 - -0.9 934,584 - -2.6 934,584 - -1.7 934,584 - -2.7 934,584 - -0.9 934,619 + -2.6 934,619 + -2.1 934,619 + -0.8 934,619 + -2.9 934,619 + -1.8 934,619 + -3.5 934,619 + -2.5 934,619 + -3.6 934,619 + -0.2 934,619 + -1.5 934,619 + -0.9 934,620 - -0.8 934,620 - +0.5 934,620 - -1.2 934,620 - -1.5 934,620 - -0.4 934,620 - -0.3 934,620 - -0.1 934,620 - -0.6 934,620 - -0.7 934,620 - -0.8 934,620 - -1.0 934,621 + -2.5 934,621 + -0.9 934,621 + -3.9 934,621 + -2.1 934,622 - +0.2 934,622 - +0.1 934,622 - -0.1 934,647 + -1.5 934,665 - -1.2 934,718 + +0.3 934,718 + +0.8 934,719 - -0.8 934,719 - -0.3 934,719 - +1.3 934,719 - -0.0 934,720 + +1.1 934,886 + OH686_04485 0.15 +0.2 934,886 + OH686_04485 0.15 -0.1 934,886 + OH686_04485 0.15 -1.1 934,886 + OH686_04485 0.15 -0.3 934,886 + OH686_04485 0.15 +0.4 934,886 + OH686_04485 0.15 -0.1 934,886 + OH686_04485 0.15 -1.4 934,886 + OH686_04485 0.15 -0.5 934,886 + OH686_04485 0.15 -1.2 934,886 + OH686_04485 0.15 +0.1 934,886 + OH686_04485 0.15 -0.1 934,886 + OH686_04485 0.15 -0.0 934,887 - OH686_04485 0.15 -1.4 934,887 - OH686_04485 0.15 +0.8 934,887 - OH686_04485 0.15 -0.9 934,887 - OH686_04485 0.15 -0.9 934,887 - OH686_04485 0.15 -0.6 934,887 - OH686_04485 0.15 +0.2 934,887 - OH686_04485 0.15 -0.4 934,887 - OH686_04485 0.15 +0.1 934,887 - OH686_04485 0.15 -0.7 934,887 - OH686_04485 0.15 -0.6 934,887 - OH686_04485 0.15 +0.3 934,887 - OH686_04485 0.15 -0.8 934,887 - OH686_04485 0.15 -1.3 934,887 - OH686_04485 0.15 -0.9 934,958 - OH686_04485 0.23 -0.0 934,974 - OH686_04485 0.25 -1.5 935,053 - OH686_04485 0.34 -0.6 935,101 + OH686_04485 0.40 -0.9 935,101 + OH686_04485 0.40 +0.8 935,102 - OH686_04485 0.40 -0.5 935,149 + OH686_04485 0.45 +0.6 935,149 + OH686_04485 0.45 +0.7 935,149 + OH686_04485 0.45 +0.7 935,149 + OH686_04485 0.45 -0.1 935,150 - OH686_04485 0.45 -0.4 935,346 + OH686_04485 0.67 +1.0 935,347 - OH686_04485 0.68 +0.2 935,361 + OH686_04485 0.69 +0.5 935,361 + OH686_04485 0.69 -0.1 935,362 - OH686_04485 0.69 +1.1 935,362 - OH686_04485 0.69 -0.6 935,422 + OH686_04485 0.76 -0.3 935,422 + OH686_04485 0.76 +0.5 935,422 + OH686_04485 0.76 -0.7 935,422 + OH686_04485 0.76 -1.0 935,422 + OH686_04485 0.76 +0.4 935,423 - OH686_04485 0.76 -2.1 935,423 - OH686_04485 0.76 +0.4 935,423 - OH686_04485 0.76 -0.1 935,423 - OH686_04485 0.76 +0.2 935,423 - OH686_04485 0.76 +1.1 935,423 - OH686_04485 0.76 -0.3 935,548 + -1.2 935,548 + -0.5 935,549 - +0.0 935,549 - -0.3 935,549 - -0.8 935,549 - +0.7 935,549 - +0.2
Or see this region's nucleotide sequence