Strain Fitness in Pseudomonas sp. S08-1 around OH686_04470

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04465 and OH686_04470 are separated by 56 nucleotidesOH686_04470 and OH686_04475 are separated by 13 nucleotidesOH686_04475 and OH686_04480 are separated by 11 nucleotides OH686_04465: OH686_04465 - aspartate-semialdehyde dehydrogenase, at 930,227 to 931,339 _04465 OH686_04470: OH686_04470 - 3-isopropylmalate dehydrogenase, at 931,396 to 932,478 _04470 OH686_04475: OH686_04475 - 3-isopropylmalate dehydratase small subunit , at 932,492 to 933,139 _04475 OH686_04480: OH686_04480 - 3-isopropylmalate dehydratase large subunit , at 933,151 to 934,578 _04480 Position (kb) 931 932 933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 931.353 kb on + strandat 931.353 kb on + strandat 931.353 kb on + strandat 931.353 kb on + strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.354 kb on - strandat 931.355 kb on + strandat 931.355 kb on + strandat 931.355 kb on + strandat 931.356 kb on - strandat 931.356 kb on - strandat 931.356 kb on - strandat 931.356 kb on - strandat 931.356 kb on - strandat 931.356 kb on - strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.357 kb on + strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.358 kb on - strandat 931.397 kb on + strandat 931.556 kb on + strand, within OH686_04470at 931.556 kb on + strand, within OH686_04470at 931.556 kb on + strand, within OH686_04470at 931.557 kb on - strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.988 kb on + strand, within OH686_04470at 931.989 kb on - strand, within OH686_04470at 931.989 kb on - strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.004 kb on - strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.148 kb on - strand, within OH686_04470at 932.148 kb on - strand, within OH686_04470at 932.273 kb on - strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.384 kb on + strandat 932.384 kb on + strandat 932.384 kb on + strandat 932.384 kb on + strandat 932.384 kb on + strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.490 kb on - strandat 932.640 kb on + strand, within OH686_04475at 932.640 kb on + strand, within OH686_04475at 932.640 kb on + strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.835 kb on + strand, within OH686_04475at 932.836 kb on - strand, within OH686_04475at 932.836 kb on - strand, within OH686_04475at 933.127 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.145 kb on - strandat 933.145 kb on - strandat 933.145 kb on - strandat 933.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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931,353 + -2.4
931,353 + -0.5
931,353 + +0.1
931,353 + -0.9
931,354 - -1.9
931,354 - +1.5
931,354 - +0.5
931,354 - +0.5
931,354 - -0.6
931,354 - -0.2
931,354 - -0.9
931,354 - -0.2
931,354 - -1.2
931,355 + -0.2
931,355 + -0.2
931,355 + -0.7
931,356 - -0.1
931,356 - -0.5
931,356 - +0.3
931,356 - +0.7
931,356 - -0.4
931,356 - -0.5
931,357 + +0.1
931,357 + -0.7
931,357 + -1.9
931,357 + -1.6
931,357 + -3.1
931,357 + -1.6
931,357 + -0.6
931,357 + -2.2
931,357 + -0.7
931,357 + -2.2
931,357 + -0.7
931,357 + -0.9
931,357 + -1.1
931,358 - -0.7
931,358 - -0.1
931,358 - +0.2
931,358 - -0.2
931,358 - -0.5
931,358 - +0.0
931,358 - +0.8
931,358 - -0.9
931,358 - +0.4
931,358 - -0.2
931,358 - +1.9
931,358 - +0.0
931,358 - -0.1
931,358 - +1.1
931,358 - +0.4
931,358 - +1.5
931,397 + -0.3
931,556 + OH686_04470 0.15 -2.8
931,556 + OH686_04470 0.15 -3.3
931,556 + OH686_04470 0.15 -0.7
931,557 - OH686_04470 0.15 -3.2
931,649 + OH686_04470 0.23 -2.8
931,649 + OH686_04470 0.23 -1.8
931,649 + OH686_04470 0.23 -1.5
931,649 + OH686_04470 0.23 -3.0
931,649 + OH686_04470 0.23 -2.2
931,649 + OH686_04470 0.23 -1.7
931,649 + OH686_04470 0.23 -2.4
931,649 + OH686_04470 0.23 -2.3
931,649 + OH686_04470 0.23 -1.3
931,649 + OH686_04470 0.23 -1.5
931,650 - OH686_04470 0.23 -3.6
931,650 - OH686_04470 0.23 -1.8
931,650 - OH686_04470 0.23 -1.5
931,650 - OH686_04470 0.23 -0.8
931,650 - OH686_04470 0.23 -3.1
931,650 - OH686_04470 0.23 +0.2
931,650 - OH686_04470 0.23 -2.6
931,650 - OH686_04470 0.23 -3.6
931,650 - OH686_04470 0.23 -1.5
931,650 - OH686_04470 0.23 -3.8
931,650 - OH686_04470 0.23 -2.3
931,650 - OH686_04470 0.23 -2.1
931,650 - OH686_04470 0.23 -4.2
931,814 + OH686_04470 0.39 -0.5
931,814 + OH686_04470 0.39 -2.4
931,814 + OH686_04470 0.39 -1.2
931,814 + OH686_04470 0.39 -4.0
931,814 + OH686_04470 0.39 -2.6
931,814 + OH686_04470 0.39 +0.1
931,814 + OH686_04470 0.39 -3.0
931,814 + OH686_04470 0.39 -1.5
931,814 + OH686_04470 0.39 -0.5
931,814 + OH686_04470 0.39 -1.8
931,814 + OH686_04470 0.39 -0.7
931,814 + OH686_04470 0.39 -0.9
931,814 + OH686_04470 0.39 -0.8
931,814 + OH686_04470 0.39 -3.7
931,814 + OH686_04470 0.39 -0.7
931,814 + OH686_04470 0.39 -0.9
931,814 + OH686_04470 0.39 -1.0
931,814 + OH686_04470 0.39 -1.2
931,814 + OH686_04470 0.39 -1.8
931,814 + OH686_04470 0.39 -2.8
931,814 + OH686_04470 0.39 -2.2
931,814 + OH686_04470 0.39 -2.5
931,814 + OH686_04470 0.39 -2.4
931,814 + OH686_04470 0.39 -1.9
931,814 + OH686_04470 0.39 -2.0
931,815 - OH686_04470 0.39 -1.3
931,815 - OH686_04470 0.39 -2.2
931,815 - OH686_04470 0.39 -1.2
931,815 - OH686_04470 0.39 -2.6
931,815 - OH686_04470 0.39 -2.0
931,815 - OH686_04470 0.39 -4.2
931,815 - OH686_04470 0.39 -3.4
931,815 - OH686_04470 0.39 -1.4
931,815 - OH686_04470 0.39 -3.6
931,815 - OH686_04470 0.39 -1.8
931,815 - OH686_04470 0.39 -2.1
931,815 - OH686_04470 0.39 +0.1
931,815 - OH686_04470 0.39 -1.3
931,815 - OH686_04470 0.39 +0.2
931,815 - OH686_04470 0.39 -0.6
931,815 - OH686_04470 0.39 -2.6
931,815 - OH686_04470 0.39 -2.3
931,988 + OH686_04470 0.55 -2.1
931,989 - OH686_04470 0.55 -3.5
931,989 - OH686_04470 0.55 -2.5
932,003 + OH686_04470 0.56 -1.4
932,003 + OH686_04470 0.56 -3.2
932,003 + OH686_04470 0.56 -2.4
932,003 + OH686_04470 0.56 -2.7
932,003 + OH686_04470 0.56 -0.9
932,004 - OH686_04470 0.56 -2.4
932,057 + OH686_04470 0.61 -1.1
932,057 + OH686_04470 0.61 -2.8
932,057 + OH686_04470 0.61 -2.9
932,057 + OH686_04470 0.61 -2.2
932,057 + OH686_04470 0.61 -3.3
932,057 + OH686_04470 0.61 -2.4
932,057 + OH686_04470 0.61 -1.1
932,057 + OH686_04470 0.61 -2.6
932,058 - OH686_04470 0.61 -2.0
932,058 - OH686_04470 0.61 -3.5
932,058 - OH686_04470 0.61 -0.4
932,058 - OH686_04470 0.61 -3.6
932,058 - OH686_04470 0.61 -2.2
932,058 - OH686_04470 0.61 -1.6
932,058 - OH686_04470 0.61 -0.2
932,148 - OH686_04470 0.69 -3.2
932,148 - OH686_04470 0.69 -1.3
932,273 - OH686_04470 0.81 -0.1
932,327 + OH686_04470 0.86 -0.9
932,327 + OH686_04470 0.86 -1.5
932,327 + OH686_04470 0.86 -1.6
932,327 + OH686_04470 0.86 -3.1
932,327 + OH686_04470 0.86 -1.8
932,327 + OH686_04470 0.86 -0.9
932,327 + OH686_04470 0.86 -2.4
932,327 + OH686_04470 0.86 -2.5
932,327 + OH686_04470 0.86 -2.8
932,328 - OH686_04470 0.86 -0.7
932,328 - OH686_04470 0.86 -2.8
932,328 - OH686_04470 0.86 -1.1
932,328 - OH686_04470 0.86 -3.6
932,328 - OH686_04470 0.86 -1.9
932,384 + -1.3
932,384 + -3.2
932,384 + -2.4
932,384 + -2.4
932,384 + -2.1
932,385 - -3.8
932,385 - -1.6
932,385 - -0.5
932,385 - -2.9
932,385 - -1.3
932,490 - +0.1
932,640 + OH686_04475 0.23 -2.4
932,640 + OH686_04475 0.23 -2.8
932,640 + OH686_04475 0.23 -2.4
932,641 - OH686_04475 0.23 -1.8
932,641 - OH686_04475 0.23 -2.9
932,641 - OH686_04475 0.23 -0.1
932,641 - OH686_04475 0.23 -2.6
932,641 - OH686_04475 0.23 -2.0
932,805 + OH686_04475 0.48 -2.8
932,805 + OH686_04475 0.48 +0.5
932,805 + OH686_04475 0.48 -1.5
932,805 + OH686_04475 0.48 -3.0
932,806 - OH686_04475 0.48 -2.9
932,806 - OH686_04475 0.48 -2.3
932,806 - OH686_04475 0.48 -1.2
932,806 - OH686_04475 0.48 -2.1
932,835 + OH686_04475 0.53 -3.1
932,836 - OH686_04475 0.53 -1.0
932,836 - OH686_04475 0.53 -3.0
933,127 + +0.1
933,144 + -0.7
933,144 + -2.4
933,144 + -1.9
933,144 + -2.5
933,144 + -2.0
933,145 - +0.4
933,145 - +0.1
933,145 - +1.6
933,181 - -0.7

Or see this region's nucleotide sequence