Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_04335 and OH686_04340 are separated by 231 nucleotides OH686_04340 and OH686_04345 are separated by 21 nucleotides OH686_04345 and OH686_04350 are separated by 147 nucleotides OH686_04350 and OH686_04355 overlap by 4 nucleotides
OH686_04335: OH686_04335 - Transcriptional regulator, AraC family, at 900,294 to 901,334
_04335
OH686_04340: OH686_04340 - tRNA-Asp, at 901,566 to 901,642
_04340
OH686_04345: OH686_04345 - tRNA-Val, at 901,664 to 901,739
_04345
OH686_04350: OH686_04350 - hypothetical protein, at 901,887 to 902,399
_04350
OH686_04355: OH686_04355 - type II secretion system protein L, at 902,396 to 903,541
_04355
Position (kb) 901
902 Strain fitness (log2 ratio) -2
-1
0
1
2 at 900.627 kb on + strand, within OH686_04335 at 900.628 kb on - strand, within OH686_04335 at 900.639 kb on + strand, within OH686_04335 at 900.653 kb on + strand, within OH686_04335 at 900.653 kb on + strand, within OH686_04335 at 900.654 kb on - strand, within OH686_04335 at 900.654 kb on - strand, within OH686_04335 at 900.693 kb on + strand, within OH686_04335 at 900.694 kb on - strand, within OH686_04335 at 900.694 kb on - strand, within OH686_04335 at 900.709 kb on - strand, within OH686_04335 at 900.709 kb on - strand, within OH686_04335 at 900.831 kb on + strand, within OH686_04335 at 900.831 kb on + strand, within OH686_04335 at 900.831 kb on + strand, within OH686_04335 at 900.831 kb on + strand, within OH686_04335 at 900.832 kb on - strand, within OH686_04335 at 901.096 kb on + strand, within OH686_04335 at 901.096 kb on + strand, within OH686_04335 at 901.097 kb on - strand, within OH686_04335 at 901.097 kb on - strand, within OH686_04335 at 901.097 kb on - strand, within OH686_04335 at 901.188 kb on + strand, within OH686_04335 at 901.188 kb on + strand, within OH686_04335 at 901.188 kb on + strand, within OH686_04335 at 901.188 kb on + strand, within OH686_04335 at 901.188 kb on + strand, within OH686_04335 at 901.188 kb on + strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.189 kb on - strand, within OH686_04335 at 901.191 kb on - strand, within OH686_04335 at 901.228 kb on - strand, within OH686_04335 at 901.407 kb on + strand at 901.407 kb on + strand at 901.407 kb on + strand at 901.407 kb on + strand at 901.408 kb on - strand at 901.408 kb on - strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.417 kb on + strand at 901.418 kb on - strand at 901.418 kb on - strand at 901.418 kb on - strand at 901.418 kb on - strand at 901.418 kb on - strand at 901.418 kb on - strand at 901.438 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.561 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.563 kb on - strand at 901.565 kb on - strand at 901.565 kb on - strand at 901.565 kb on - strand at 901.565 kb on - strand at 901.565 kb on - strand at 901.565 kb on - strand at 901.565 kb on - strand at 901.621 kb on + strand, within OH686_04340 at 901.634 kb on + strand, within OH686_04340 at 901.634 kb on + strand, within OH686_04340 at 901.634 kb on + strand, within OH686_04340 at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.663 kb on - strand at 901.705 kb on + strand, within OH686_04345 at 901.705 kb on + strand, within OH686_04345 at 901.731 kb on + strand, within OH686_04345 at 901.731 kb on + strand, within OH686_04345 at 901.731 kb on + strand, within OH686_04345 at 901.767 kb on - strand at 901.767 kb on - strand at 901.783 kb on + strand at 902.185 kb on + strand, within OH686_04350 at 902.186 kb on - strand, within OH686_04350 at 902.186 kb on - strand, within OH686_04350 at 902.266 kb on + strand, within OH686_04350 at 902.266 kb on + strand, within OH686_04350 at 902.266 kb on + strand, within OH686_04350 at 902.267 kb on - strand, within OH686_04350 at 902.267 kb on - strand, within OH686_04350 at 902.267 kb on - strand, within OH686_04350 at 902.405 kb on - strand at 902.494 kb on + strand at 902.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 900,627 + OH686_04335 0.32 -0.1 900,628 - OH686_04335 0.32 +0.3 900,639 + OH686_04335 0.33 -0.1 900,653 + OH686_04335 0.34 -1.2 900,653 + OH686_04335 0.34 +0.0 900,654 - OH686_04335 0.35 +0.3 900,654 - OH686_04335 0.35 +0.1 900,693 + OH686_04335 0.38 +0.3 900,694 - OH686_04335 0.38 +0.5 900,694 - OH686_04335 0.38 -1.2 900,709 - OH686_04335 0.40 +0.2 900,709 - OH686_04335 0.40 +0.5 900,831 + OH686_04335 0.52 -0.5 900,831 + OH686_04335 0.52 +0.6 900,831 + OH686_04335 0.52 -0.8 900,831 + OH686_04335 0.52 +0.0 900,832 - OH686_04335 0.52 +2.1 901,096 + OH686_04335 0.77 -1.2 901,096 + OH686_04335 0.77 -1.4 901,097 - OH686_04335 0.77 -0.4 901,097 - OH686_04335 0.77 +0.1 901,097 - OH686_04335 0.77 +0.1 901,188 + OH686_04335 0.86 +0.7 901,188 + OH686_04335 0.86 -0.1 901,188 + OH686_04335 0.86 -0.1 901,188 + OH686_04335 0.86 -0.3 901,188 + OH686_04335 0.86 -0.3 901,188 + OH686_04335 0.86 -0.2 901,189 - OH686_04335 0.86 +0.2 901,189 - OH686_04335 0.86 +1.4 901,189 - OH686_04335 0.86 +1.3 901,189 - OH686_04335 0.86 -0.8 901,189 - OH686_04335 0.86 +0.4 901,189 - OH686_04335 0.86 -0.0 901,189 - OH686_04335 0.86 +1.1 901,189 - OH686_04335 0.86 -0.7 901,191 - OH686_04335 0.86 +0.6 901,228 - OH686_04335 0.90 -0.8 901,407 + -0.2 901,407 + -0.4 901,407 + -0.1 901,407 + -1.6 901,408 - -0.6 901,408 - +0.2 901,417 + -0.4 901,417 + +0.0 901,417 + -0.7 901,417 + +0.3 901,417 + -0.1 901,417 + +0.6 901,418 - -0.7 901,418 - -1.2 901,418 - +0.1 901,418 - -0.0 901,418 - -0.0 901,418 - -0.5 901,438 - -0.4 901,561 - +0.1 901,561 - +0.7 901,561 - -0.1 901,561 - -1.1 901,561 - -0.9 901,561 - -0.6 901,561 - -0.6 901,561 - -1.4 901,561 - +0.5 901,561 - +1.1 901,561 - -0.9 901,561 - -0.5 901,561 - -0.9 901,561 - -2.4 901,561 - +0.5 901,561 - -0.3 901,561 - -0.2 901,561 - -1.1 901,561 - +0.1 901,561 - +0.5 901,563 - +0.2 901,563 - +0.3 901,563 - +1.9 901,563 - +0.3 901,563 - -0.4 901,563 - +0.8 901,563 - -0.1 901,563 - -0.6 901,563 - -0.1 901,563 - -1.1 901,563 - -1.0 901,563 - +0.4 901,563 - +0.8 901,563 - +0.2 901,563 - +0.1 901,563 - +0.2 901,563 - -0.1 901,565 - +0.1 901,565 - -0.5 901,565 - +0.1 901,565 - -0.4 901,565 - -0.0 901,565 - +1.3 901,565 - +0.9 901,621 + OH686_04340 0.71 -0.2 901,634 + OH686_04340 0.88 -0.6 901,634 + OH686_04340 0.88 -2.4 901,634 + OH686_04340 0.88 -1.1 901,663 - -0.1 901,663 - +0.6 901,663 - +0.5 901,663 - -0.9 901,663 - -0.4 901,663 - +0.2 901,663 - +0.3 901,663 - -2.1 901,663 - -1.4 901,663 - -1.4 901,663 - -2.6 901,705 + OH686_04345 0.54 -0.6 901,705 + OH686_04345 0.54 +1.0 901,731 + OH686_04345 0.88 -1.1 901,731 + OH686_04345 0.88 -0.1 901,731 + OH686_04345 0.88 -0.1 901,767 - +0.1 901,767 - -0.9 901,783 + +1.2 902,185 + OH686_04350 0.58 +0.5 902,186 - OH686_04350 0.58 -0.4 902,186 - OH686_04350 0.58 -0.6 902,266 + OH686_04350 0.74 +0.6 902,266 + OH686_04350 0.74 -0.1 902,266 + OH686_04350 0.74 -0.9 902,267 - OH686_04350 0.74 +0.1 902,267 - OH686_04350 0.74 +0.2 902,267 - OH686_04350 0.74 +0.4 902,405 - +1.1 902,494 + +0.3 902,495 - +0.0
Or see this region's nucleotide sequence