Strain Fitness in Pseudomonas sp. S08-1 around OH686_04045

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04035 and OH686_04040 are separated by 128 nucleotidesOH686_04040 and OH686_04045 are separated by 245 nucleotidesOH686_04045 and OH686_04050 are separated by 23 nucleotidesOH686_04050 and OH686_04055 overlap by 50 nucleotides OH686_04035: OH686_04035 - Hydrolase, alpha/beta fold family, at 830,390 to 831,253 _04035 OH686_04040: OH686_04040 - hypothetical protein, at 831,382 to 831,576 _04040 OH686_04045: OH686_04045 - hypothetical protein, at 831,822 to 831,989 _04045 OH686_04050: OH686_04050 - hypothetical protein, at 832,013 to 832,774 _04050 OH686_04055: OH686_04055 - hypothetical protein, at 832,725 to 833,543 _04055 Position (kb) 831 832Strain fitness (log2 ratio) -2 -1 0 1at 830.901 kb on + strand, within OH686_04035at 830.929 kb on + strand, within OH686_04035at 831.024 kb on + strand, within OH686_04035at 831.129 kb on + strand, within OH686_04035at 831.129 kb on + strand, within OH686_04035at 831.129 kb on + strand, within OH686_04035at 831.129 kb on + strand, within OH686_04035at 831.130 kb on - strand, within OH686_04035at 831.130 kb on - strand, within OH686_04035at 831.198 kb on + strandat 831.198 kb on + strandat 831.198 kb on + strandat 831.198 kb on + strandat 831.199 kb on - strandat 831.199 kb on - strandat 831.199 kb on - strandat 831.199 kb on - strandat 831.223 kb on + strandat 831.223 kb on + strandat 831.223 kb on + strandat 831.223 kb on + strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.224 kb on - strandat 831.285 kb on + strandat 831.286 kb on - strandat 831.299 kb on + strandat 831.299 kb on + strandat 831.300 kb on - strandat 831.361 kb on + strandat 831.361 kb on + strandat 831.383 kb on + strandat 831.384 kb on - strandat 831.384 kb on - strandat 831.384 kb on - strandat 831.417 kb on + strand, within OH686_04040at 831.417 kb on + strand, within OH686_04040at 831.417 kb on + strand, within OH686_04040at 831.417 kb on + strand, within OH686_04040at 831.417 kb on + strand, within OH686_04040at 831.418 kb on - strand, within OH686_04040at 831.418 kb on - strand, within OH686_04040at 831.418 kb on - strand, within OH686_04040at 831.418 kb on - strand, within OH686_04040at 831.418 kb on - strand, within OH686_04040at 831.619 kb on + strandat 831.619 kb on + strandat 831.620 kb on - strandat 831.620 kb on - strandat 831.620 kb on - strandat 831.685 kb on - strandat 831.789 kb on + strandat 831.790 kb on - strandat 831.831 kb on + strandat 831.831 kb on + strandat 831.832 kb on - strandat 831.832 kb on - strandat 831.832 kb on - strandat 831.832 kb on - strandat 831.866 kb on + strand, within OH686_04045at 831.867 kb on - strand, within OH686_04045at 831.867 kb on - strand, within OH686_04045at 832.117 kb on + strand, within OH686_04050at 832.275 kb on - strand, within OH686_04050at 832.275 kb on - strand, within OH686_04050at 832.357 kb on + strand, within OH686_04050at 832.357 kb on + strand, within OH686_04050at 832.357 kb on + strand, within OH686_04050at 832.357 kb on + strand, within OH686_04050at 832.357 kb on + strand, within OH686_04050at 832.358 kb on - strand, within OH686_04050at 832.358 kb on - strand, within OH686_04050at 832.358 kb on - strand, within OH686_04050at 832.401 kb on + strand, within OH686_04050at 832.401 kb on + strand, within OH686_04050at 832.664 kb on + strand, within OH686_04050at 832.682 kb on + strand, within OH686_04050at 832.682 kb on + strand, within OH686_04050at 832.682 kb on + strand, within OH686_04050at 832.682 kb on + strand, within OH686_04050at 832.682 kb on + strand, within OH686_04050at 832.683 kb on - strand, within OH686_04050at 832.696 kb on - strand, within OH686_04050at 832.754 kb on + strandat 832.755 kb on - strandat 832.762 kb on - strandat 832.779 kb on + strandat 832.779 kb on + strandat 832.780 kb on - strandat 832.888 kb on + strand, within OH686_04055at 832.888 kb on + strand, within OH686_04055

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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830,901 + OH686_04035 0.59 +0.7
830,929 + OH686_04035 0.62 -0.5
831,024 + OH686_04035 0.73 +0.3
831,129 + OH686_04035 0.86 -0.6
831,129 + OH686_04035 0.86 +0.4
831,129 + OH686_04035 0.86 +0.0
831,129 + OH686_04035 0.86 +0.3
831,130 - OH686_04035 0.86 -0.8
831,130 - OH686_04035 0.86 -0.3
831,198 + -0.1
831,198 + -0.0
831,198 + -1.3
831,198 + -0.1
831,199 - -1.0
831,199 - -0.3
831,199 - -0.1
831,199 - +0.1
831,223 + +0.4
831,223 + -0.5
831,223 + +0.2
831,223 + +0.7
831,224 - -0.2
831,224 - -1.0
831,224 - -0.4
831,224 - -0.4
831,224 - +0.8
831,224 - -0.5
831,224 - +0.4
831,224 - +0.8
831,224 - +0.4
831,285 + -1.2
831,286 - -0.5
831,299 + -0.5
831,299 + +0.5
831,300 - +0.1
831,361 + -0.4
831,361 + -0.1
831,383 + +0.2
831,384 - -1.5
831,384 - +0.5
831,384 - -0.6
831,417 + OH686_04040 0.18 -0.5
831,417 + OH686_04040 0.18 +0.2
831,417 + OH686_04040 0.18 +0.9
831,417 + OH686_04040 0.18 -0.3
831,417 + OH686_04040 0.18 -0.6
831,418 - OH686_04040 0.18 -0.4
831,418 - OH686_04040 0.18 +1.4
831,418 - OH686_04040 0.18 +0.0
831,418 - OH686_04040 0.18 -2.3
831,418 - OH686_04040 0.18 -0.1
831,619 + -2.1
831,619 + -0.2
831,620 - -0.4
831,620 - +0.4
831,620 - +0.2
831,685 - +0.6
831,789 + -0.3
831,790 - -0.2
831,831 + -0.5
831,831 + -1.1
831,832 - -1.1
831,832 - -1.3
831,832 - -0.1
831,832 - +0.2
831,866 + OH686_04045 0.26 -1.5
831,867 - OH686_04045 0.27 -1.3
831,867 - OH686_04045 0.27 +0.6
832,117 + OH686_04050 0.14 -0.5
832,275 - OH686_04050 0.34 +0.4
832,275 - OH686_04050 0.34 -0.6
832,357 + OH686_04050 0.45 -0.3
832,357 + OH686_04050 0.45 -0.1
832,357 + OH686_04050 0.45 -0.9
832,357 + OH686_04050 0.45 -0.3
832,357 + OH686_04050 0.45 -0.0
832,358 - OH686_04050 0.45 +0.1
832,358 - OH686_04050 0.45 +0.3
832,358 - OH686_04050 0.45 -1.2
832,401 + OH686_04050 0.51 +0.9
832,401 + OH686_04050 0.51 -0.6
832,664 + OH686_04050 0.85 +0.2
832,682 + OH686_04050 0.88 -1.3
832,682 + OH686_04050 0.88 +0.7
832,682 + OH686_04050 0.88 +0.3
832,682 + OH686_04050 0.88 -0.5
832,682 + OH686_04050 0.88 -0.8
832,683 - OH686_04050 0.88 +0.4
832,696 - OH686_04050 0.90 -0.2
832,754 + -0.2
832,755 - -0.9
832,762 - +1.0
832,779 + +0.2
832,779 + -0.5
832,780 - -0.1
832,888 + OH686_04055 0.20 -0.2
832,888 + OH686_04055 0.20 +0.4

Or see this region's nucleotide sequence