Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_03950 and OH686_03955 are separated by 62 nucleotides OH686_03955 and OH686_03960 are separated by 174 nucleotides OH686_03960 and OH686_03965 are separated by 57 nucleotides OH686_03965 and OH686_03970 are separated by 449 nucleotides
OH686_03950: OH686_03950 - Bacterioferritin-associated ferredoxin, at 814,646 to 814,864
_03950
OH686_03955: OH686_03955 - tRNA-(ms[2]io[6]A)-hydroxylase, at 814,927 to 815,532
_03955
OH686_03960: OH686_03960 - Universal stress protein family 7, at 815,707 to 816,570
_03960
OH686_03965: OH686_03965 - hypothetical protein, at 816,628 to 817,104
_03965
OH686_03970: OH686_03970 - aconitate hydratase 2, at 817,554 to 820,163
_03970
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 815.049 kb on - strand, within OH686_03955 at 815.063 kb on + strand, within OH686_03955 at 815.063 kb on + strand, within OH686_03955 at 815.063 kb on + strand, within OH686_03955 at 815.064 kb on - strand, within OH686_03955 at 815.064 kb on - strand, within OH686_03955 at 815.105 kb on + strand, within OH686_03955 at 815.105 kb on + strand, within OH686_03955 at 815.106 kb on - strand, within OH686_03955 at 815.175 kb on + strand, within OH686_03955 at 815.175 kb on + strand, within OH686_03955 at 815.176 kb on - strand, within OH686_03955 at 815.252 kb on + strand, within OH686_03955 at 815.253 kb on - strand, within OH686_03955 at 815.382 kb on - strand, within OH686_03955 at 815.420 kb on + strand, within OH686_03955 at 815.421 kb on - strand, within OH686_03955 at 815.421 kb on - strand, within OH686_03955 at 815.421 kb on - strand, within OH686_03955 at 815.421 kb on - strand, within OH686_03955 at 815.421 kb on - strand, within OH686_03955 at 815.551 kb on - strand at 815.593 kb on + strand at 815.594 kb on - strand at 815.594 kb on - strand at 815.594 kb on - strand at 815.594 kb on - strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.595 kb on + strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.596 kb on - strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.663 kb on + strand at 815.664 kb on - strand at 815.664 kb on - strand at 815.664 kb on - strand at 815.664 kb on - strand at 815.664 kb on - strand at 815.664 kb on - strand at 815.664 kb on - strand at 815.665 kb on + strand at 815.665 kb on + strand at 815.665 kb on + strand at 815.665 kb on + strand at 815.665 kb on + strand at 815.666 kb on - strand at 815.666 kb on - strand at 815.666 kb on - strand at 815.666 kb on - strand at 815.666 kb on - strand at 815.717 kb on + strand at 815.717 kb on + strand at 815.718 kb on - strand at 815.851 kb on + strand, within OH686_03960 at 815.851 kb on + strand, within OH686_03960 at 815.851 kb on + strand, within OH686_03960 at 815.851 kb on + strand, within OH686_03960 at 815.851 kb on + strand, within OH686_03960 at 815.852 kb on - strand, within OH686_03960 at 815.852 kb on - strand, within OH686_03960 at 815.852 kb on - strand, within OH686_03960 at 815.852 kb on - strand, within OH686_03960 at 815.891 kb on - strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.937 kb on + strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 815.938 kb on - strand, within OH686_03960 at 816.049 kb on + strand, within OH686_03960 at 816.050 kb on - strand, within OH686_03960 at 816.068 kb on + strand, within OH686_03960 at 816.069 kb on - strand, within OH686_03960 at 816.069 kb on - strand, within OH686_03960 at 816.182 kb on - strand, within OH686_03960 at 816.328 kb on + strand, within OH686_03960 at 816.328 kb on + strand, within OH686_03960 at 816.329 kb on - strand, within OH686_03960 at 816.388 kb on + strand, within OH686_03960 at 816.388 kb on + strand, within OH686_03960 at 816.515 kb on + strand at 816.515 kb on + strand at 816.516 kb on - strand at 816.516 kb on - strand at 816.624 kb on + strand at 816.674 kb on + strand at 816.674 kb on + strand at 816.674 kb on + strand at 816.674 kb on + strand at 816.674 kb on + strand at 816.674 kb on + strand at 816.674 kb on + strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.675 kb on - strand at 816.683 kb on + strand, within OH686_03965 at 816.780 kb on - strand, within OH686_03965 at 816.827 kb on + strand, within OH686_03965 at 816.828 kb on - strand, within OH686_03965 at 816.839 kb on + strand, within OH686_03965 at 816.840 kb on - strand, within OH686_03965 at 816.989 kb on + strand, within OH686_03965 at 816.990 kb on - strand, within OH686_03965 at 817.052 kb on + strand, within OH686_03965 at 817.053 kb on - strand, within OH686_03965 at 817.053 kb on - strand, within OH686_03965 at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.104 kb on + strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.105 kb on - strand at 817.144 kb on + strand at 817.145 kb on - strand at 817.160 kb on + strand at 817.216 kb on + strand at 817.221 kb on + strand at 817.221 kb on + strand at 817.221 kb on + strand at 817.221 kb on + strand at 817.221 kb on + strand at 817.221 kb on + strand at 817.221 kb on + strand at 817.222 kb on - strand at 817.222 kb on - strand at 817.222 kb on - strand at 817.222 kb on - strand at 817.273 kb on + strand at 817.274 kb on - strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.438 kb on + strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.439 kb on - strand at 817.441 kb on + strand at 817.441 kb on + strand at 817.441 kb on + strand at 817.441 kb on + strand at 817.441 kb on + strand at 817.441 kb on + strand at 817.506 kb on + strand at 817.506 kb on + strand at 817.506 kb on + strand at 817.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 815,049 - OH686_03955 0.20 -1.6 815,063 + OH686_03955 0.22 +0.8 815,063 + OH686_03955 0.22 +0.2 815,063 + OH686_03955 0.22 +0.6 815,064 - OH686_03955 0.23 -1.2 815,064 - OH686_03955 0.23 -0.3 815,105 + OH686_03955 0.29 -0.5 815,105 + OH686_03955 0.29 -0.4 815,106 - OH686_03955 0.30 +0.2 815,175 + OH686_03955 0.41 -1.2 815,175 + OH686_03955 0.41 -0.4 815,176 - OH686_03955 0.41 +0.4 815,252 + OH686_03955 0.54 +0.2 815,253 - OH686_03955 0.54 +0.2 815,382 - OH686_03955 0.75 +0.0 815,420 + OH686_03955 0.81 +0.1 815,421 - OH686_03955 0.82 +0.1 815,421 - OH686_03955 0.82 +0.4 815,421 - OH686_03955 0.82 -0.5 815,421 - OH686_03955 0.82 +0.2 815,421 - OH686_03955 0.82 +0.5 815,551 - +0.6 815,593 + -0.8 815,594 - -0.1 815,594 - -0.1 815,594 - -1.1 815,594 - -0.2 815,595 + +0.8 815,595 + +0.3 815,595 + +0.1 815,595 + +1.6 815,595 + -0.4 815,595 + +0.3 815,595 + +0.5 815,595 + -0.8 815,596 - -0.4 815,596 - +0.0 815,596 - +0.3 815,596 - -0.6 815,596 - -0.2 815,596 - +1.6 815,596 - -1.1 815,596 - +0.1 815,596 - +0.7 815,596 - -0.4 815,663 + -0.3 815,663 + -2.0 815,663 + -1.5 815,663 + -0.6 815,663 + -0.2 815,663 + +1.5 815,663 + +0.4 815,663 + +0.2 815,664 - +1.5 815,664 - -0.1 815,664 - -0.5 815,664 - +0.1 815,664 - +0.5 815,664 - -0.3 815,664 - -0.1 815,665 + +0.6 815,665 + -0.2 815,665 + -2.1 815,665 + -2.3 815,665 + +0.0 815,666 - -0.1 815,666 - -0.5 815,666 - -1.4 815,666 - +0.2 815,666 - -0.1 815,717 + -0.6 815,717 + +1.4 815,718 - -0.4 815,851 + OH686_03960 0.17 +0.6 815,851 + OH686_03960 0.17 -0.2 815,851 + OH686_03960 0.17 +0.2 815,851 + OH686_03960 0.17 -0.0 815,851 + OH686_03960 0.17 -0.5 815,852 - OH686_03960 0.17 -0.1 815,852 - OH686_03960 0.17 -0.2 815,852 - OH686_03960 0.17 +0.4 815,852 - OH686_03960 0.17 -0.7 815,891 - OH686_03960 0.21 -0.7 815,937 + OH686_03960 0.27 +1.4 815,937 + OH686_03960 0.27 -0.5 815,937 + OH686_03960 0.27 -0.2 815,937 + OH686_03960 0.27 -0.7 815,937 + OH686_03960 0.27 -0.4 815,937 + OH686_03960 0.27 +0.6 815,937 + OH686_03960 0.27 -0.1 815,937 + OH686_03960 0.27 +0.0 815,937 + OH686_03960 0.27 -0.3 815,938 - OH686_03960 0.27 +0.3 815,938 - OH686_03960 0.27 -0.4 815,938 - OH686_03960 0.27 -0.5 815,938 - OH686_03960 0.27 -0.1 815,938 - OH686_03960 0.27 +0.5 815,938 - OH686_03960 0.27 -0.3 815,938 - OH686_03960 0.27 +0.5 815,938 - OH686_03960 0.27 -0.5 815,938 - OH686_03960 0.27 -0.0 815,938 - OH686_03960 0.27 +0.8 816,049 + OH686_03960 0.40 -0.0 816,050 - OH686_03960 0.40 -0.2 816,068 + OH686_03960 0.42 -1.4 816,069 - OH686_03960 0.42 -1.2 816,069 - OH686_03960 0.42 -0.2 816,182 - OH686_03960 0.55 +0.1 816,328 + OH686_03960 0.72 -0.1 816,328 + OH686_03960 0.72 -0.5 816,329 - OH686_03960 0.72 +0.3 816,388 + OH686_03960 0.79 -0.7 816,388 + OH686_03960 0.79 +0.4 816,515 + +0.2 816,515 + -0.7 816,516 - -0.8 816,516 - +0.8 816,624 + -0.5 816,674 + +0.3 816,674 + -0.4 816,674 + -0.2 816,674 + -0.5 816,674 + +0.2 816,674 + +0.1 816,674 + -0.3 816,675 - -0.3 816,675 - -2.4 816,675 - -0.2 816,675 - +0.6 816,675 - -0.6 816,675 - +0.3 816,675 - -0.5 816,675 - +0.6 816,683 + OH686_03965 0.12 -0.6 816,780 - OH686_03965 0.32 +0.8 816,827 + OH686_03965 0.42 -0.6 816,828 - OH686_03965 0.42 -0.1 816,839 + OH686_03965 0.44 -0.9 816,840 - OH686_03965 0.44 +0.5 816,989 + OH686_03965 0.76 +0.1 816,990 - OH686_03965 0.76 +1.7 817,052 + OH686_03965 0.89 +0.9 817,053 - OH686_03965 0.89 -0.9 817,053 - OH686_03965 0.89 -1.7 817,104 + -0.5 817,104 + -0.5 817,104 + +0.0 817,104 + -0.5 817,104 + -0.2 817,104 + -1.1 817,104 + +1.7 817,104 + -1.4 817,104 + -0.7 817,104 + -0.1 817,104 + -0.7 817,104 + +1.3 817,105 - -0.3 817,105 - -0.2 817,105 - -1.0 817,105 - +0.6 817,105 - -1.2 817,105 - +0.7 817,105 - -0.4 817,105 - -0.1 817,105 - -0.2 817,144 + +0.3 817,145 - +0.4 817,160 + -0.0 817,216 + -0.7 817,221 + -0.0 817,221 + +0.0 817,221 + -0.2 817,221 + -1.1 817,221 + -0.4 817,221 + -0.4 817,221 + +0.3 817,222 - +0.4 817,222 - +0.6 817,222 - +1.6 817,222 - -0.5 817,273 + +0.9 817,274 - +0.8 817,438 + +0.1 817,438 + -0.6 817,438 + -0.2 817,438 + -0.6 817,438 + +1.1 817,438 + -0.5 817,438 + +0.1 817,438 + -0.4 817,439 - +0.9 817,439 - -0.0 817,439 - +0.2 817,439 - +0.5 817,439 - +0.5 817,439 - -1.4 817,439 - +1.3 817,439 - -0.6 817,439 - +0.8 817,439 - -0.2 817,439 - -0.2 817,439 - +0.5 817,439 - -0.2 817,441 + -0.1 817,441 + -0.6 817,441 + -2.4 817,441 + -0.4 817,441 + +0.2 817,441 + -0.2 817,506 + +1.3 817,506 + -0.6 817,506 + +0.1 817,507 - +0.1
Or see this region's nucleotide sequence