Strain Fitness in Pseudomonas sp. S08-1 around OH686_03640

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03635 and OH686_03640 are separated by 147 nucleotidesOH686_03640 and OH686_03645 are separated by 108 nucleotidesOH686_03645 and OH686_03650 are separated by 92 nucleotides OH686_03635: OH686_03635 - endopeptidase La, at 752,012 to 754,408 _03635 OH686_03640: OH686_03640 - ATP-dependent Clp protease, ATP-binding subunit ClpX, at 754,556 to 755,836 _03640 OH686_03645: OH686_03645 - ATP-dependent Clp endopeptidase, proteolytic subunit ClpP, at 755,945 to 756,586 _03645 OH686_03650: OH686_03650 - trigger factor, at 756,679 to 757,989 _03650 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 753.631 kb on + strand, within OH686_03635at 753.631 kb on + strand, within OH686_03635at 753.632 kb on - strand, within OH686_03635at 753.632 kb on - strand, within OH686_03635at 753.632 kb on - strand, within OH686_03635at 753.735 kb on + strand, within OH686_03635at 753.735 kb on + strand, within OH686_03635at 753.736 kb on - strand, within OH686_03635at 753.738 kb on + strand, within OH686_03635at 753.738 kb on + strand, within OH686_03635at 753.739 kb on - strand, within OH686_03635at 753.739 kb on - strand, within OH686_03635at 753.739 kb on - strand, within OH686_03635at 753.739 kb on - strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.995 kb on + strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.996 kb on - strand, within OH686_03635at 753.999 kb on + strand, within OH686_03635at 753.999 kb on + strand, within OH686_03635at 753.999 kb on + strand, within OH686_03635at 753.999 kb on + strand, within OH686_03635at 753.999 kb on + strand, within OH686_03635at 754.000 kb on - strand, within OH686_03635at 754.000 kb on - strand, within OH686_03635at 754.000 kb on - strand, within OH686_03635at 754.216 kb on - strandat 754.357 kb on - strandat 754.421 kb on - strandat 754.454 kb on - strandat 754.466 kb on - strandat 754.466 kb on - strandat 754.548 kb on + strandat 754.599 kb on + strandat 754.599 kb on + strandat 754.600 kb on - strandat 754.600 kb on - strandat 754.684 kb on - strand, within OH686_03640at 755.289 kb on + strand, within OH686_03640at 755.315 kb on + strand, within OH686_03640at 755.315 kb on + strand, within OH686_03640at 755.316 kb on - strand, within OH686_03640at 755.316 kb on - strand, within OH686_03640at 755.322 kb on + strand, within OH686_03640at 755.604 kb on + strand, within OH686_03640at 755.850 kb on + strandat 756.245 kb on - strand, within OH686_03645at 756.352 kb on - strand, within OH686_03645at 756.396 kb on - strand, within OH686_03645at 756.605 kb on - strandat 756.605 kb on - strandat 756.605 kb on - strandat 756.607 kb on + strandat 756.608 kb on - strandat 756.608 kb on - strandat 756.608 kb on - strandat 756.608 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.630 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.652 kb on - strandat 756.766 kb on - strandat 756.766 kb on - strandat 756.770 kb on - strandat 756.770 kb on - strandat 756.827 kb on + strand, within OH686_03650at 756.827 kb on + strand, within OH686_03650at 756.827 kb on + strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.828 kb on - strand, within OH686_03650at 756.830 kb on + strand, within OH686_03650at 756.830 kb on + strand, within OH686_03650

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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753,631 + OH686_03635 0.68 +0.7
753,631 + OH686_03635 0.68 +0.1
753,632 - OH686_03635 0.68 -0.3
753,632 - OH686_03635 0.68 -0.3
753,632 - OH686_03635 0.68 +1.1
753,735 + OH686_03635 0.72 -0.9
753,735 + OH686_03635 0.72 -0.9
753,736 - OH686_03635 0.72 +0.1
753,738 + OH686_03635 0.72 -0.7
753,738 + OH686_03635 0.72 +0.1
753,739 - OH686_03635 0.72 +0.8
753,739 - OH686_03635 0.72 +0.7
753,739 - OH686_03635 0.72 -0.5
753,739 - OH686_03635 0.72 +1.3
753,995 + OH686_03635 0.83 +0.5
753,995 + OH686_03635 0.83 -0.5
753,995 + OH686_03635 0.83 -1.5
753,995 + OH686_03635 0.83 -0.9
753,995 + OH686_03635 0.83 -0.3
753,995 + OH686_03635 0.83 +1.1
753,995 + OH686_03635 0.83 -0.5
753,996 - OH686_03635 0.83 -0.4
753,996 - OH686_03635 0.83 -0.6
753,996 - OH686_03635 0.83 -0.6
753,996 - OH686_03635 0.83 -0.3
753,996 - OH686_03635 0.83 -0.9
753,996 - OH686_03635 0.83 -1.8
753,996 - OH686_03635 0.83 +0.3
753,996 - OH686_03635 0.83 -0.0
753,996 - OH686_03635 0.83 +0.1
753,996 - OH686_03635 0.83 +1.1
753,999 + OH686_03635 0.83 -0.3
753,999 + OH686_03635 0.83 -0.9
753,999 + OH686_03635 0.83 -1.4
753,999 + OH686_03635 0.83 +0.5
753,999 + OH686_03635 0.83 +0.2
754,000 - OH686_03635 0.83 -0.3
754,000 - OH686_03635 0.83 -1.2
754,000 - OH686_03635 0.83 +1.3
754,216 - -1.6
754,357 - +0.1
754,421 - +0.3
754,454 - +0.1
754,466 - +0.0
754,466 - -1.2
754,548 + +1.1
754,599 + -0.4
754,599 + +0.1
754,600 - +0.2
754,600 - +0.5
754,684 - OH686_03640 0.10 +1.1
755,289 + OH686_03640 0.57 +0.1
755,315 + OH686_03640 0.59 +0.1
755,315 + OH686_03640 0.59 -0.0
755,316 - OH686_03640 0.59 -1.1
755,316 - OH686_03640 0.59 +1.6
755,322 + OH686_03640 0.60 -0.5
755,604 + OH686_03640 0.82 -0.3
755,850 + -0.3
756,245 - OH686_03645 0.47 +0.1
756,352 - OH686_03645 0.63 +0.1
756,396 - OH686_03645 0.70 +0.1
756,605 - +0.8
756,605 - -0.9
756,605 - +0.7
756,607 + +0.1
756,608 - +0.8
756,608 - -0.2
756,608 - +0.3
756,608 - -0.3
756,630 - +1.0
756,630 - -0.4
756,630 - +0.2
756,630 - +1.1
756,630 - +0.1
756,652 - -1.4
756,652 - +0.3
756,652 - +0.6
756,652 - +1.0
756,652 - -0.3
756,652 - +0.4
756,652 - -1.3
756,766 - +0.7
756,766 - -1.9
756,770 - +0.1
756,770 - +0.2
756,827 + OH686_03650 0.11 -0.0
756,827 + OH686_03650 0.11 +0.1
756,827 + OH686_03650 0.11 +0.4
756,828 - OH686_03650 0.11 +0.0
756,828 - OH686_03650 0.11 -0.1
756,828 - OH686_03650 0.11 -1.5
756,828 - OH686_03650 0.11 +2.1
756,828 - OH686_03650 0.11 +0.8
756,828 - OH686_03650 0.11 +1.3
756,828 - OH686_03650 0.11 -0.6
756,828 - OH686_03650 0.11 -1.3
756,830 + OH686_03650 0.12 +1.1
756,830 + OH686_03650 0.12 -0.7

Or see this region's nucleotide sequence