Strain Fitness in Pseudomonas sp. S08-1 around OH686_02190

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02185 and OH686_02190 are separated by 340 nucleotidesOH686_02190 and OH686_02195 overlap by 1 nucleotidesOH686_02195 and OH686_02200 are separated by 18 nucleotidesOH686_02200 and OH686_02205 overlap by 4 nucleotides OH686_02185: OH686_02185 - cytochrome c oxidase, cbb3-type, subunit III, at 469,641 to 470,591 _02185 OH686_02190: OH686_02190 - cytochrome c oxidase, cbb3-type, subunit I, at 470,932 to 472,374 _02190 OH686_02195: OH686_02195 - cytochrome c oxidase, cbb3-type, subunit II, at 472,374 to 472,991 _02195 OH686_02200: OH686_02200 - Cytochrome c oxidase (cbb3-type) subunit CcoQ , at 473,010 to 473,183 _02200 OH686_02205: OH686_02205 - cytochrome c oxidase, cbb3-type, subunit III, at 473,180 to 474,157 _02205 Position (kb) 470 471 472 473Strain fitness (log2 ratio) -2 -1 0 1at 469.968 kb on + strand, within OH686_02185at 469.980 kb on + strand, within OH686_02185at 469.981 kb on - strand, within OH686_02185at 469.981 kb on - strand, within OH686_02185at 469.989 kb on + strand, within OH686_02185at 469.990 kb on - strand, within OH686_02185at 469.990 kb on - strand, within OH686_02185at 469.990 kb on - strand, within OH686_02185at 470.234 kb on - strand, within OH686_02185at 470.250 kb on + strand, within OH686_02185at 470.250 kb on + strand, within OH686_02185at 470.250 kb on + strand, within OH686_02185at 470.251 kb on - strand, within OH686_02185at 470.251 kb on - strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.418 kb on + strand, within OH686_02185at 470.419 kb on - strand, within OH686_02185at 470.419 kb on - strand, within OH686_02185at 470.419 kb on - strand, within OH686_02185at 470.419 kb on - strand, within OH686_02185at 470.419 kb on - strand, within OH686_02185at 470.493 kb on + strand, within OH686_02185at 470.493 kb on + strand, within OH686_02185at 470.493 kb on + strand, within OH686_02185at 470.493 kb on + strand, within OH686_02185at 470.493 kb on + strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.494 kb on - strand, within OH686_02185at 470.532 kb on + strandat 470.532 kb on + strandat 470.532 kb on + strandat 470.533 kb on - strandat 470.533 kb on - strandat 470.533 kb on - strandat 470.538 kb on + strandat 470.538 kb on + strandat 470.539 kb on - strandat 470.539 kb on - strandat 470.539 kb on - strandat 470.634 kb on + strandat 470.634 kb on + strandat 470.761 kb on + strandat 470.761 kb on + strandat 470.761 kb on + strandat 470.761 kb on + strandat 470.761 kb on + strandat 470.762 kb on - strandat 470.762 kb on - strandat 470.762 kb on - strandat 470.762 kb on - strandat 470.762 kb on - strandat 470.876 kb on + strandat 470.922 kb on + strandat 471.166 kb on + strand, within OH686_02190at 471.166 kb on + strand, within OH686_02190at 471.170 kb on - strand, within OH686_02190at 471.170 kb on - strand, within OH686_02190at 471.170 kb on - strand, within OH686_02190at 471.284 kb on - strand, within OH686_02190at 471.301 kb on + strand, within OH686_02190at 471.355 kb on + strand, within OH686_02190at 471.356 kb on - strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.406 kb on + strand, within OH686_02190at 471.407 kb on - strand, within OH686_02190at 471.410 kb on + strand, within OH686_02190at 471.601 kb on + strand, within OH686_02190at 471.602 kb on - strand, within OH686_02190at 471.604 kb on + strand, within OH686_02190at 471.715 kb on + strand, within OH686_02190at 471.831 kb on + strand, within OH686_02190at 471.831 kb on + strand, within OH686_02190at 471.832 kb on - strand, within OH686_02190at 471.832 kb on - strand, within OH686_02190at 471.947 kb on - strand, within OH686_02190at 472.022 kb on - strand, within OH686_02190at 472.118 kb on - strand, within OH686_02190at 472.118 kb on - strand, within OH686_02190at 472.292 kb on - strandat 472.292 kb on - strandat 472.333 kb on + strandat 472.333 kb on + strandat 472.333 kb on + strandat 472.333 kb on + strandat 472.333 kb on + strandat 472.333 kb on + strandat 472.334 kb on - strandat 472.557 kb on + strand, within OH686_02195at 472.557 kb on + strand, within OH686_02195at 472.557 kb on + strand, within OH686_02195at 472.557 kb on + strand, within OH686_02195at 472.558 kb on - strand, within OH686_02195at 472.756 kb on - strand, within OH686_02195at 472.756 kb on - strand, within OH686_02195at 472.879 kb on - strand, within OH686_02195at 472.973 kb on + strandat 472.974 kb on - strandat 472.974 kb on - strandat 473.174 kb on + strandat 473.174 kb on + strandat 473.198 kb on - strandat 473.201 kb on + strandat 473.201 kb on + strandat 473.239 kb on - strandat 473.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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469,968 + OH686_02185 0.34 +0.3
469,980 + OH686_02185 0.36 -0.0
469,981 - OH686_02185 0.36 -0.8
469,981 - OH686_02185 0.36 -1.1
469,989 + OH686_02185 0.37 +0.4
469,990 - OH686_02185 0.37 +0.2
469,990 - OH686_02185 0.37 -0.7
469,990 - OH686_02185 0.37 +0.3
470,234 - OH686_02185 0.62 +0.1
470,250 + OH686_02185 0.64 -1.8
470,250 + OH686_02185 0.64 -0.9
470,250 + OH686_02185 0.64 +0.1
470,251 - OH686_02185 0.64 +0.5
470,251 - OH686_02185 0.64 -0.3
470,418 + OH686_02185 0.82 +1.0
470,418 + OH686_02185 0.82 -1.1
470,418 + OH686_02185 0.82 -0.8
470,418 + OH686_02185 0.82 +0.2
470,418 + OH686_02185 0.82 -0.4
470,418 + OH686_02185 0.82 +0.7
470,418 + OH686_02185 0.82 -1.4
470,418 + OH686_02185 0.82 +0.3
470,418 + OH686_02185 0.82 -0.6
470,419 - OH686_02185 0.82 -0.1
470,419 - OH686_02185 0.82 +0.4
470,419 - OH686_02185 0.82 +0.2
470,419 - OH686_02185 0.82 -0.3
470,419 - OH686_02185 0.82 +0.0
470,493 + OH686_02185 0.90 +1.0
470,493 + OH686_02185 0.90 -0.6
470,493 + OH686_02185 0.90 -0.1
470,493 + OH686_02185 0.90 -0.7
470,493 + OH686_02185 0.90 +0.8
470,494 - OH686_02185 0.90 +0.3
470,494 - OH686_02185 0.90 -0.7
470,494 - OH686_02185 0.90 +1.2
470,494 - OH686_02185 0.90 +1.4
470,494 - OH686_02185 0.90 +0.5
470,494 - OH686_02185 0.90 +0.2
470,494 - OH686_02185 0.90 +0.4
470,494 - OH686_02185 0.90 -1.1
470,494 - OH686_02185 0.90 -0.1
470,494 - OH686_02185 0.90 +0.0
470,532 + +0.3
470,532 + +0.3
470,532 + -0.4
470,533 - +0.3
470,533 - -0.0
470,533 - +0.2
470,538 + +0.6
470,538 + -0.6
470,539 - -1.6
470,539 - +0.5
470,539 - +0.2
470,634 + -0.8
470,634 + -0.1
470,761 + -0.0
470,761 + +0.1
470,761 + -1.0
470,761 + +1.0
470,761 + +0.6
470,762 - -0.4
470,762 - +0.2
470,762 - +0.2
470,762 - -0.8
470,762 - -0.7
470,876 + -1.1
470,922 + -1.5
471,166 + OH686_02190 0.16 -0.5
471,166 + OH686_02190 0.16 -0.3
471,170 - OH686_02190 0.16 +0.0
471,170 - OH686_02190 0.16 -0.5
471,170 - OH686_02190 0.16 -0.3
471,284 - OH686_02190 0.24 +0.5
471,301 + OH686_02190 0.26 -0.3
471,355 + OH686_02190 0.29 +0.0
471,356 - OH686_02190 0.29 -0.8
471,406 + OH686_02190 0.33 -1.1
471,406 + OH686_02190 0.33 -0.3
471,406 + OH686_02190 0.33 -1.0
471,406 + OH686_02190 0.33 -0.1
471,406 + OH686_02190 0.33 -0.5
471,406 + OH686_02190 0.33 +1.0
471,406 + OH686_02190 0.33 -0.3
471,406 + OH686_02190 0.33 -0.4
471,407 - OH686_02190 0.33 +1.3
471,410 + OH686_02190 0.33 -1.9
471,601 + OH686_02190 0.46 -0.5
471,602 - OH686_02190 0.46 +0.0
471,604 + OH686_02190 0.47 +1.3
471,715 + OH686_02190 0.54 -0.5
471,831 + OH686_02190 0.62 -1.0
471,831 + OH686_02190 0.62 +1.6
471,832 - OH686_02190 0.62 -0.8
471,832 - OH686_02190 0.62 +0.0
471,947 - OH686_02190 0.70 +0.0
472,022 - OH686_02190 0.76 +0.0
472,118 - OH686_02190 0.82 +0.0
472,118 - OH686_02190 0.82 -1.1
472,292 - +0.7
472,292 - +0.0
472,333 + +0.5
472,333 + +0.0
472,333 + -2.0
472,333 + -0.5
472,333 + -0.3
472,333 + -0.2
472,334 - -0.3
472,557 + OH686_02195 0.30 +1.6
472,557 + OH686_02195 0.30 +0.7
472,557 + OH686_02195 0.30 +0.7
472,557 + OH686_02195 0.30 +1.0
472,558 - OH686_02195 0.30 -0.3
472,756 - OH686_02195 0.62 -0.5
472,756 - OH686_02195 0.62 +0.0
472,879 - OH686_02195 0.82 -0.8
472,973 + +0.9
472,974 - +1.0
472,974 - -0.3
473,174 + +1.0
473,174 + +0.6
473,198 - +0.7
473,201 + +1.3
473,201 + +1.0
473,239 - -0.8
473,239 - -0.3

Or see this region's nucleotide sequence