Strain Fitness in Pseudomonas sp. S08-1 around OH686_01680

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01675 and OH686_01680 are separated by 125 nucleotidesOH686_01680 and OH686_01685 are separated by 11 nucleotides OH686_01675: OH686_01675 - probable AcnD-accessory protein PrpF, at 360,956 to 362,143 _01675 OH686_01680: OH686_01680 - 2-methylisocitrate dehydratase, Fe/S-dependent, at 362,269 to 364,878 _01680 OH686_01685: OH686_01685 - 2-methylcitrate synthase , at 364,890 to 366,053 _01685 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -2 -1 0 1 2at 361.284 kb on + strand, within OH686_01675at 361.285 kb on - strand, within OH686_01675at 361.738 kb on + strand, within OH686_01675at 361.888 kb on - strand, within OH686_01675at 362.058 kb on - strandat 362.107 kb on - strandat 362.107 kb on - strandat 362.107 kb on - strandat 362.107 kb on - strandat 362.107 kb on - strandat 362.141 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.257 kb on + strandat 362.258 kb on - strandat 362.258 kb on - strandat 362.258 kb on - strandat 362.258 kb on - strandat 362.258 kb on - strandat 362.258 kb on - strandat 362.258 kb on - strandat 362.330 kb on + strandat 362.330 kb on + strandat 362.330 kb on + strandat 362.331 kb on - strandat 362.331 kb on - strandat 362.331 kb on - strandat 362.453 kb on + strandat 362.453 kb on + strandat 362.453 kb on + strandat 362.453 kb on + strandat 362.454 kb on - strandat 362.597 kb on - strand, within OH686_01680at 362.682 kb on - strand, within OH686_01680at 362.682 kb on - strand, within OH686_01680at 362.682 kb on - strand, within OH686_01680at 362.888 kb on + strand, within OH686_01680at 362.889 kb on - strand, within OH686_01680at 363.020 kb on + strand, within OH686_01680at 363.038 kb on + strand, within OH686_01680at 363.038 kb on + strand, within OH686_01680at 363.038 kb on + strand, within OH686_01680at 363.039 kb on - strand, within OH686_01680at 363.039 kb on - strand, within OH686_01680at 363.039 kb on - strand, within OH686_01680at 363.039 kb on - strand, within OH686_01680at 363.114 kb on - strand, within OH686_01680at 363.114 kb on - strand, within OH686_01680at 363.114 kb on - strand, within OH686_01680at 363.372 kb on - strand, within OH686_01680at 363.432 kb on + strand, within OH686_01680at 363.450 kb on - strand, within OH686_01680at 363.887 kb on + strand, within OH686_01680at 363.887 kb on + strand, within OH686_01680at 363.987 kb on - strand, within OH686_01680at 364.064 kb on + strand, within OH686_01680at 364.064 kb on + strand, within OH686_01680at 364.064 kb on + strand, within OH686_01680at 364.065 kb on - strand, within OH686_01680at 364.065 kb on - strand, within OH686_01680at 364.065 kb on - strand, within OH686_01680at 364.772 kb on + strandat 364.772 kb on + strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.833 kb on - strandat 364.885 kb on - strandat 364.891 kb on + strandat 364.892 kb on - strandat 364.892 kb on - strandat 364.892 kb on - strandat 364.939 kb on + strandat 364.939 kb on + strandat 364.939 kb on + strandat 364.939 kb on + strandat 364.939 kb on + strandat 364.939 kb on + strandat 364.939 kb on + strandat 364.940 kb on - strandat 364.940 kb on - strandat 364.973 kb on + strandat 365.065 kb on + strand, within OH686_01685at 365.065 kb on + strand, within OH686_01685at 365.065 kb on + strand, within OH686_01685at 365.065 kb on + strand, within OH686_01685at 365.065 kb on + strand, within OH686_01685at 365.066 kb on - strand, within OH686_01685at 365.066 kb on - strand, within OH686_01685at 365.066 kb on - strand, within OH686_01685at 365.066 kb on - strand, within OH686_01685at 365.066 kb on - strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.230 kb on + strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.231 kb on - strand, within OH686_01685at 365.314 kb on + strand, within OH686_01685at 365.315 kb on - strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.401 kb on + strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.402 kb on - strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.614 kb on + strand, within OH686_01685at 365.615 kb on - strand, within OH686_01685at 365.822 kb on + strand, within OH686_01685at 365.822 kb on + strand, within OH686_01685at 365.822 kb on + strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.823 kb on - strand, within OH686_01685at 365.824 kb on + strand, within OH686_01685at 365.824 kb on + strand, within OH686_01685at 365.825 kb on - strand, within OH686_01685at 365.825 kb on - strand, within OH686_01685at 365.825 kb on - strand, within OH686_01685

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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361,284 + OH686_01675 0.28 +0.0
361,285 - OH686_01675 0.28 +0.0
361,738 + OH686_01675 0.66 +0.2
361,888 - OH686_01675 0.78 +0.0
362,058 - +0.0
362,107 - -0.4
362,107 - +1.0
362,107 - -0.9
362,107 - +1.0
362,107 - +1.0
362,141 + -0.9
362,257 + +2.5
362,257 + +0.1
362,257 + +0.8
362,257 + -0.6
362,257 + -1.2
362,257 + +0.9
362,257 + -0.1
362,257 + -0.7
362,257 + -1.0
362,257 + +0.4
362,258 - -0.9
362,258 - -0.0
362,258 - +0.3
362,258 - -0.4
362,258 - -0.9
362,258 - -0.1
362,258 - -0.3
362,330 + +0.6
362,330 + +1.7
362,330 + -1.1
362,331 - -0.8
362,331 - +0.2
362,331 - +0.0
362,453 + +0.0
362,453 + -0.3
362,453 + -0.8
362,453 + -1.8
362,454 - +0.6
362,597 - OH686_01680 0.13 -0.3
362,682 - OH686_01680 0.16 -0.3
362,682 - OH686_01680 0.16 -0.3
362,682 - OH686_01680 0.16 +0.7
362,888 + OH686_01680 0.24 +0.0
362,889 - OH686_01680 0.24 -0.3
363,020 + OH686_01680 0.29 +0.0
363,038 + OH686_01680 0.29 -0.8
363,038 + OH686_01680 0.29 -0.3
363,038 + OH686_01680 0.29 +1.9
363,039 - OH686_01680 0.30 -0.8
363,039 - OH686_01680 0.30 +0.0
363,039 - OH686_01680 0.30 -1.1
363,039 - OH686_01680 0.30 +0.5
363,114 - OH686_01680 0.32 -0.8
363,114 - OH686_01680 0.32 -0.3
363,114 - OH686_01680 0.32 +1.3
363,372 - OH686_01680 0.42 +1.0
363,432 + OH686_01680 0.45 +0.0
363,450 - OH686_01680 0.45 +1.0
363,887 + OH686_01680 0.62 +0.0
363,887 + OH686_01680 0.62 -0.3
363,987 - OH686_01680 0.66 -0.8
364,064 + OH686_01680 0.69 +0.0
364,064 + OH686_01680 0.69 +0.0
364,064 + OH686_01680 0.69 +0.0
364,065 - OH686_01680 0.69 +0.0
364,065 - OH686_01680 0.69 +0.7
364,065 - OH686_01680 0.69 +0.5
364,772 + +0.9
364,772 + +0.5
364,773 - +1.6
364,773 - -1.1
364,833 - -1.1
364,885 - +0.2
364,891 + -0.4
364,892 - +0.8
364,892 - -0.5
364,892 - -0.1
364,939 + -0.7
364,939 + +0.0
364,939 + +1.5
364,939 + -0.2
364,939 + -1.1
364,939 + +1.0
364,939 + -0.1
364,940 - +0.3
364,940 - +0.2
364,973 + -0.3
365,065 + OH686_01685 0.15 +0.7
365,065 + OH686_01685 0.15 +0.3
365,065 + OH686_01685 0.15 -0.2
365,065 + OH686_01685 0.15 -0.1
365,065 + OH686_01685 0.15 -0.5
365,066 - OH686_01685 0.15 -0.6
365,066 - OH686_01685 0.15 -0.3
365,066 - OH686_01685 0.15 -1.6
365,066 - OH686_01685 0.15 -1.0
365,066 - OH686_01685 0.15 -0.0
365,230 + OH686_01685 0.29 -0.6
365,230 + OH686_01685 0.29 +0.0
365,230 + OH686_01685 0.29 -1.6
365,230 + OH686_01685 0.29 +2.6
365,230 + OH686_01685 0.29 -0.1
365,231 - OH686_01685 0.29 +1.0
365,231 - OH686_01685 0.29 +1.3
365,231 - OH686_01685 0.29 +0.0
365,231 - OH686_01685 0.29 +1.0
365,231 - OH686_01685 0.29 +0.4
365,314 + OH686_01685 0.36 -1.1
365,315 - OH686_01685 0.37 +1.1
365,401 + OH686_01685 0.44 +0.5
365,401 + OH686_01685 0.44 +0.7
365,401 + OH686_01685 0.44 -0.5
365,401 + OH686_01685 0.44 +0.5
365,401 + OH686_01685 0.44 +0.6
365,401 + OH686_01685 0.44 +0.5
365,401 + OH686_01685 0.44 -1.1
365,401 + OH686_01685 0.44 +0.3
365,401 + OH686_01685 0.44 +0.1
365,401 + OH686_01685 0.44 -1.2
365,401 + OH686_01685 0.44 -1.0
365,401 + OH686_01685 0.44 +0.6
365,401 + OH686_01685 0.44 -0.3
365,401 + OH686_01685 0.44 +0.0
365,401 + OH686_01685 0.44 +0.0
365,401 + OH686_01685 0.44 +0.2
365,401 + OH686_01685 0.44 -0.8
365,401 + OH686_01685 0.44 +0.3
365,401 + OH686_01685 0.44 +1.3
365,401 + OH686_01685 0.44 +0.7
365,401 + OH686_01685 0.44 +0.5
365,401 + OH686_01685 0.44 -1.0
365,401 + OH686_01685 0.44 +0.6
365,401 + OH686_01685 0.44 -0.7
365,402 - OH686_01685 0.44 +1.1
365,402 - OH686_01685 0.44 +0.9
365,402 - OH686_01685 0.44 +0.8
365,402 - OH686_01685 0.44 +0.5
365,402 - OH686_01685 0.44 +0.8
365,402 - OH686_01685 0.44 -0.3
365,402 - OH686_01685 0.44 +0.6
365,402 - OH686_01685 0.44 -1.0
365,402 - OH686_01685 0.44 -0.2
365,402 - OH686_01685 0.44 -0.2
365,402 - OH686_01685 0.44 +0.0
365,402 - OH686_01685 0.44 +0.4
365,402 - OH686_01685 0.44 -0.8
365,402 - OH686_01685 0.44 -1.0
365,402 - OH686_01685 0.44 -1.3
365,402 - OH686_01685 0.44 -1.2
365,614 + OH686_01685 0.62 -0.7
365,614 + OH686_01685 0.62 -1.0
365,614 + OH686_01685 0.62 -2.1
365,614 + OH686_01685 0.62 -1.6
365,614 + OH686_01685 0.62 -0.2
365,614 + OH686_01685 0.62 -0.5
365,614 + OH686_01685 0.62 -0.9
365,615 - OH686_01685 0.62 -0.0
365,822 + OH686_01685 0.80 +0.7
365,822 + OH686_01685 0.80 -0.8
365,822 + OH686_01685 0.80 -0.6
365,823 - OH686_01685 0.80 -0.5
365,823 - OH686_01685 0.80 -0.0
365,823 - OH686_01685 0.80 +0.3
365,823 - OH686_01685 0.80 -1.1
365,823 - OH686_01685 0.80 -0.5
365,823 - OH686_01685 0.80 -1.1
365,823 - OH686_01685 0.80 -0.7
365,823 - OH686_01685 0.80 -0.7
365,824 + OH686_01685 0.80 +0.0
365,824 + OH686_01685 0.80 +0.5
365,825 - OH686_01685 0.80 -0.0
365,825 - OH686_01685 0.80 -1.2
365,825 - OH686_01685 0.80 -0.4

Or see this region's nucleotide sequence