Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_01620 and OH686_01625 are separated by 163 nucleotides OH686_01625 and OH686_01630 are separated by 140 nucleotides OH686_01630 and OH686_01635 are separated by 89 nucleotides
OH686_01620: OH686_01620 - UTP--glucose-1-phosphate uridylyltransferase, at 350,264 to 351,103
_01620
OH686_01625: OH686_01625 - Nonspecific porin and structural outer membrane protein OprF, at 351,267 to 352,229
_01625
OH686_01630: OH686_01630 - RNA polymerase sigma factor SigX, at 352,370 to 352,960
_01630
OH686_01635: OH686_01635 - CmpX, at 353,050 to 353,874
_01635
Position (kb) 351
352
353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.268 kb on + strand at 350.269 kb on - strand at 350.269 kb on - strand at 350.286 kb on + strand at 350.286 kb on + strand at 350.286 kb on + strand at 350.286 kb on + strand at 350.287 kb on - strand at 350.287 kb on - strand at 350.287 kb on - strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.322 kb on + strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.323 kb on - strand at 350.367 kb on + strand, within OH686_01620 at 350.368 kb on - strand, within OH686_01620 at 350.368 kb on - strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.484 kb on + strand, within OH686_01620 at 350.485 kb on - strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.595 kb on + strand, within OH686_01620 at 350.596 kb on - strand, within OH686_01620 at 350.596 kb on - strand, within OH686_01620 at 350.618 kb on + strand, within OH686_01620 at 350.618 kb on + strand, within OH686_01620 at 350.618 kb on + strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.619 kb on - strand, within OH686_01620 at 350.658 kb on + strand, within OH686_01620 at 350.658 kb on + strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.659 kb on - strand, within OH686_01620 at 350.808 kb on + strand, within OH686_01620 at 350.808 kb on + strand, within OH686_01620 at 350.808 kb on + strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.809 kb on - strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.853 kb on + strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.854 kb on - strand, within OH686_01620 at 350.895 kb on + strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.896 kb on - strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.929 kb on + strand, within OH686_01620 at 350.930 kb on - strand, within OH686_01620 at 350.930 kb on - strand, within OH686_01620 at 350.930 kb on - strand, within OH686_01620 at 350.992 kb on - strand, within OH686_01620 at 350.992 kb on - strand, within OH686_01620 at 351.069 kb on + strand at 351.116 kb on + strand at 351.117 kb on - strand at 351.117 kb on - strand at 351.117 kb on - strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.146 kb on + strand at 351.147 kb on - strand at 351.147 kb on - strand at 351.147 kb on - strand at 351.147 kb on - strand at 351.165 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.166 kb on + strand at 351.167 kb on - strand at 351.167 kb on - strand at 351.167 kb on - strand at 351.191 kb on - strand at 351.206 kb on + strand at 351.235 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.268 kb on + strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.269 kb on - strand at 351.286 kb on - strand at 351.286 kb on - strand at 351.286 kb on - strand at 351.297 kb on + strand at 351.298 kb on - strand at 351.361 kb on + strand at 351.391 kb on - strand, within OH686_01625 at 351.391 kb on - strand, within OH686_01625 at 351.391 kb on - strand, within OH686_01625 at 351.397 kb on + strand, within OH686_01625 at 351.411 kb on + strand, within OH686_01625 at 351.411 kb on + strand, within OH686_01625 at 351.412 kb on - strand, within OH686_01625 at 351.458 kb on - strand, within OH686_01625 at 351.458 kb on - strand, within OH686_01625 at 352.234 kb on - strand at 352.256 kb on - strand at 352.258 kb on + strand at 352.258 kb on + strand at 352.258 kb on + strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.259 kb on - strand at 352.351 kb on + strand at 353.029 kb on - strand at 353.029 kb on - strand at 353.029 kb on - strand at 353.029 kb on - strand at 353.029 kb on - strand at 353.029 kb on - strand at 353.029 kb on - strand at 353.034 kb on - strand at 353.034 kb on - strand at 353.082 kb on + strand at 353.198 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635 at 353.213 kb on + strand, within OH686_01635
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 350,268 + -0.5 350,269 - +0.3 350,269 - -0.0 350,286 + -0.2 350,286 + -0.1 350,286 + +0.2 350,286 + +1.3 350,287 - -0.8 350,287 - +0.1 350,287 - +0.3 350,322 + -0.3 350,322 + -0.4 350,322 + +0.4 350,322 + -2.4 350,322 + -0.0 350,323 - -1.1 350,323 - -0.2 350,323 - -1.7 350,323 - +0.1 350,323 - +0.6 350,323 - +0.4 350,367 + OH686_01620 0.12 +0.4 350,368 - OH686_01620 0.12 +0.5 350,368 - OH686_01620 0.12 -2.1 350,484 + OH686_01620 0.26 +0.6 350,484 + OH686_01620 0.26 -0.8 350,484 + OH686_01620 0.26 -0.1 350,484 + OH686_01620 0.26 -1.1 350,484 + OH686_01620 0.26 +0.4 350,484 + OH686_01620 0.26 +0.3 350,484 + OH686_01620 0.26 +0.0 350,485 - OH686_01620 0.26 +0.6 350,595 + OH686_01620 0.39 -0.3 350,595 + OH686_01620 0.39 -1.2 350,595 + OH686_01620 0.39 +0.1 350,595 + OH686_01620 0.39 -0.2 350,596 - OH686_01620 0.40 +1.0 350,596 - OH686_01620 0.40 -0.5 350,618 + OH686_01620 0.42 -0.1 350,618 + OH686_01620 0.42 +0.0 350,618 + OH686_01620 0.42 -0.3 350,619 - OH686_01620 0.42 -0.3 350,619 - OH686_01620 0.42 -0.5 350,619 - OH686_01620 0.42 +0.8 350,619 - OH686_01620 0.42 -0.5 350,658 + OH686_01620 0.47 -0.0 350,658 + OH686_01620 0.47 -1.7 350,659 - OH686_01620 0.47 +0.2 350,659 - OH686_01620 0.47 +0.2 350,659 - OH686_01620 0.47 -1.3 350,659 - OH686_01620 0.47 +0.4 350,659 - OH686_01620 0.47 -0.6 350,808 + OH686_01620 0.65 -0.6 350,808 + OH686_01620 0.65 +0.3 350,808 + OH686_01620 0.65 +0.8 350,809 - OH686_01620 0.65 -0.3 350,809 - OH686_01620 0.65 -1.3 350,809 - OH686_01620 0.65 -1.0 350,809 - OH686_01620 0.65 -0.0 350,809 - OH686_01620 0.65 -1.3 350,853 + OH686_01620 0.70 +0.6 350,853 + OH686_01620 0.70 -1.6 350,853 + OH686_01620 0.70 -0.5 350,853 + OH686_01620 0.70 +0.7 350,854 - OH686_01620 0.70 -0.5 350,854 - OH686_01620 0.70 +2.0 350,854 - OH686_01620 0.70 -0.6 350,854 - OH686_01620 0.70 -0.9 350,895 + OH686_01620 0.75 -1.2 350,896 - OH686_01620 0.75 -0.3 350,896 - OH686_01620 0.75 -1.5 350,896 - OH686_01620 0.75 -0.4 350,896 - OH686_01620 0.75 +0.0 350,896 - OH686_01620 0.75 -0.3 350,929 + OH686_01620 0.79 -0.3 350,929 + OH686_01620 0.79 +0.2 350,929 + OH686_01620 0.79 -0.6 350,929 + OH686_01620 0.79 +0.5 350,930 - OH686_01620 0.79 +1.2 350,930 - OH686_01620 0.79 -0.4 350,930 - OH686_01620 0.79 +0.9 350,992 - OH686_01620 0.87 +0.2 350,992 - OH686_01620 0.87 -0.6 351,069 + -0.0 351,116 + +0.0 351,117 - +1.6 351,117 - +0.5 351,117 - -0.3 351,146 + -0.0 351,146 + +0.7 351,146 + -0.4 351,146 + +0.0 351,146 + -0.0 351,147 - -1.1 351,147 - -0.6 351,147 - +0.2 351,147 - +0.6 351,165 + -1.0 351,166 + -0.4 351,166 + -0.9 351,166 + -0.9 351,166 + +1.0 351,166 + +0.6 351,166 + -2.1 351,167 - -0.5 351,167 - -0.1 351,167 - +1.8 351,191 - +0.8 351,206 + -0.2 351,235 + -1.0 351,268 + -0.5 351,268 + +0.6 351,268 + -1.3 351,268 + -2.1 351,268 + -2.2 351,269 - -0.3 351,269 - +0.2 351,269 - +0.7 351,269 - -0.0 351,269 - -1.0 351,269 - -0.6 351,286 - -2.8 351,286 - -0.4 351,286 - +1.4 351,297 + -0.3 351,298 - -0.1 351,361 + -2.3 351,391 - OH686_01625 0.13 +0.7 351,391 - OH686_01625 0.13 -1.1 351,391 - OH686_01625 0.13 +0.5 351,397 + OH686_01625 0.13 +0.0 351,411 + OH686_01625 0.15 -0.8 351,411 + OH686_01625 0.15 +0.5 351,412 - OH686_01625 0.15 -1.1 351,458 - OH686_01625 0.20 -1.0 351,458 - OH686_01625 0.20 -1.3 352,234 - +0.0 352,256 - +1.0 352,258 + +0.8 352,258 + +0.0 352,258 + -0.8 352,259 - -0.2 352,259 - +0.2 352,259 - +0.6 352,259 - +0.1 352,259 - +0.3 352,259 - +0.3 352,259 - -0.4 352,259 - +0.7 352,259 - +0.2 352,259 - -1.5 352,259 - -1.9 352,351 + +0.9 353,029 - +0.7 353,029 - -0.5 353,029 - -0.5 353,029 - +1.0 353,029 - +0.9 353,029 - +0.2 353,029 - +0.1 353,034 - +0.5 353,034 - -0.9 353,082 + +1.6 353,198 + OH686_01635 0.18 +1.7 353,213 + OH686_01635 0.20 +0.5 353,213 + OH686_01635 0.20 +0.2 353,213 + OH686_01635 0.20 +0.5 353,213 + OH686_01635 0.20 -0.5 353,213 + OH686_01635 0.20 -0.5 353,213 + OH686_01635 0.20 +0.0 353,213 + OH686_01635 0.20 +0.5 353,213 + OH686_01635 0.20 +0.7 353,213 + OH686_01635 0.20 +0.0 353,213 + OH686_01635 0.20 -1.9 353,213 + OH686_01635 0.20 +1.0 353,213 + OH686_01635 0.20 +1.5 353,213 + OH686_01635 0.20 -1.5 353,213 + OH686_01635 0.20 +0.5 353,213 + OH686_01635 0.20 -0.3 353,213 + OH686_01635 0.20 +0.6
Or see this region's nucleotide sequence