Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1283

Experiment: m.b. Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1282 and Echvi_1283 overlap by 14 nucleotidesEchvi_1283 and Echvi_1284 are separated by 154 nucleotides Echvi_1282: Echvi_1282 - ABC-type sugar transport system, ATPase component, at 1,470,198 to 1,471,706 _1282 Echvi_1283: Echvi_1283 - Predicted periplasmic lipoprotein (DUF2291)., at 1,471,693 to 1,472,358 _1283 Echvi_1284: Echvi_1284 - ABC-type sugar transport system, periplasmic component, at 1,472,513 to 1,473,463 _1284 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1470.818 kb on + strand, within Echvi_1282at 1470.819 kb on - strand, within Echvi_1282at 1471.014 kb on + strand, within Echvi_1282at 1471.104 kb on + strand, within Echvi_1282at 1471.127 kb on + strand, within Echvi_1282at 1471.127 kb on + strand, within Echvi_1282at 1471.127 kb on + strand, within Echvi_1282at 1471.129 kb on + strand, within Echvi_1282at 1471.129 kb on + strand, within Echvi_1282at 1471.129 kb on + strand, within Echvi_1282at 1471.130 kb on - strand, within Echvi_1282at 1471.300 kb on - strand, within Echvi_1282at 1471.381 kb on - strand, within Echvi_1282at 1471.469 kb on + strand, within Echvi_1282at 1471.469 kb on + strand, within Echvi_1282at 1471.470 kb on - strand, within Echvi_1282at 1471.526 kb on + strand, within Echvi_1282at 1471.527 kb on - strand, within Echvi_1282at 1471.528 kb on + strand, within Echvi_1282at 1471.528 kb on + strand, within Echvi_1282at 1471.544 kb on + strand, within Echvi_1282at 1471.545 kb on - strand, within Echvi_1282at 1471.620 kb on + strandat 1471.672 kb on - strandat 1471.821 kb on + strand, within Echvi_1283at 1471.821 kb on + strand, within Echvi_1283at 1471.821 kb on + strand, within Echvi_1283at 1471.973 kb on + strand, within Echvi_1283at 1472.023 kb on + strand, within Echvi_1283at 1472.173 kb on + strand, within Echvi_1283at 1472.226 kb on - strand, within Echvi_1283at 1472.315 kb on - strandat 1472.402 kb on + strandat 1472.514 kb on + strandat 1472.538 kb on + strandat 1472.538 kb on + strandat 1472.538 kb on + strandat 1472.539 kb on - strandat 1472.546 kb on + strandat 1472.614 kb on + strand, within Echvi_1284at 1472.616 kb on + strand, within Echvi_1284at 1472.616 kb on + strand, within Echvi_1284at 1472.616 kb on + strand, within Echvi_1284at 1472.616 kb on + strand, within Echvi_1284at 1472.616 kb on + strand, within Echvi_1284at 1473.030 kb on + strand, within Echvi_1284at 1473.057 kb on + strand, within Echvi_1284at 1473.057 kb on + strand, within Echvi_1284at 1473.057 kb on + strand, within Echvi_1284at 1473.062 kb on - strand, within Echvi_1284at 1473.247 kb on + strand, within Echvi_1284at 1473.247 kb on + strand, within Echvi_1284at 1473.346 kb on + strand, within Echvi_1284at 1473.346 kb on + strand, within Echvi_1284at 1473.346 kb on + strand, within Echvi_1284at 1473.347 kb on - strand, within Echvi_1284at 1473.347 kb on - strand, within Echvi_1284at 1473.350 kb on + strand, within Echvi_1284at 1473.356 kb on + strand, within Echvi_1284

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.2 mM
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1,470,818 + Echvi_1282 0.41 -1.2
1,470,819 - Echvi_1282 0.41 -0.5
1,471,014 + Echvi_1282 0.54 +0.5
1,471,104 + Echvi_1282 0.60 -0.4
1,471,127 + Echvi_1282 0.62 -0.2
1,471,127 + Echvi_1282 0.62 +0.4
1,471,127 + Echvi_1282 0.62 +0.1
1,471,129 + Echvi_1282 0.62 -0.8
1,471,129 + Echvi_1282 0.62 +0.7
1,471,129 + Echvi_1282 0.62 +0.4
1,471,130 - Echvi_1282 0.62 +2.8
1,471,300 - Echvi_1282 0.73 -1.4
1,471,381 - Echvi_1282 0.78 +0.5
1,471,469 + Echvi_1282 0.84 +0.5
1,471,469 + Echvi_1282 0.84 +0.8
1,471,470 - Echvi_1282 0.84 -1.2
1,471,526 + Echvi_1282 0.88 +1.5
1,471,527 - Echvi_1282 0.88 -0.8
1,471,528 + Echvi_1282 0.88 -0.6
1,471,528 + Echvi_1282 0.88 -0.4
1,471,544 + Echvi_1282 0.89 -0.3
1,471,545 - Echvi_1282 0.89 +0.5
1,471,620 + -1.1
1,471,672 - +1.2
1,471,821 + Echvi_1283 0.19 -0.6
1,471,821 + Echvi_1283 0.19 +0.5
1,471,821 + Echvi_1283 0.19 -1.1
1,471,973 + Echvi_1283 0.42 -0.2
1,472,023 + Echvi_1283 0.50 +1.0
1,472,173 + Echvi_1283 0.72 -1.1
1,472,226 - Echvi_1283 0.80 +1.4
1,472,315 - +0.8
1,472,402 + +1.3
1,472,514 + +0.8
1,472,538 + -0.5
1,472,538 + -0.6
1,472,538 + +0.3
1,472,539 - +0.0
1,472,546 + -1.2
1,472,614 + Echvi_1284 0.11 +1.0
1,472,616 + Echvi_1284 0.11 +4.4
1,472,616 + Echvi_1284 0.11 -2.4
1,472,616 + Echvi_1284 0.11 -1.2
1,472,616 + Echvi_1284 0.11 +0.2
1,472,616 + Echvi_1284 0.11 +0.4
1,473,030 + Echvi_1284 0.54 +1.5
1,473,057 + Echvi_1284 0.57 +0.1
1,473,057 + Echvi_1284 0.57 +0.7
1,473,057 + Echvi_1284 0.57 -0.5
1,473,062 - Echvi_1284 0.58 -0.5
1,473,247 + Echvi_1284 0.77 +0.7
1,473,247 + Echvi_1284 0.77 -0.7
1,473,346 + Echvi_1284 0.88 -0.2
1,473,346 + Echvi_1284 0.88 +0.2
1,473,346 + Echvi_1284 0.88 +1.3
1,473,347 - Echvi_1284 0.88 -0.5
1,473,347 - Echvi_1284 0.88 +0.0
1,473,350 + Echvi_1284 0.88 -1.8
1,473,356 + Echvi_1284 0.89 +0.7

Or see this region's nucleotide sequence