Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4509 and EX28DRAFT_4510 are separated by 9 nucleotides EX28DRAFT_4510 and EX28DRAFT_4511 are separated by 63 nucleotides
EX28DRAFT_4509: EX28DRAFT_4509 - fatty oxidation complex, beta subunit FadA, at 74,173 to 75,336
_4509
EX28DRAFT_4510: EX28DRAFT_4510 - fatty oxidation complex, alpha subunit FadB, at 75,346 to 77,662
_4510
EX28DRAFT_4511: EX28DRAFT_4511 - Xaa-Pro aminopeptidase, at 77,726 to 79,057
_4511
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 74.379 kb on + strand, within EX28DRAFT_4509 at 74.536 kb on + strand, within EX28DRAFT_4509 at 74.629 kb on - strand, within EX28DRAFT_4509 at 74.629 kb on - strand, within EX28DRAFT_4509 at 74.689 kb on + strand, within EX28DRAFT_4509 at 74.689 kb on + strand, within EX28DRAFT_4509 at 74.690 kb on - strand, within EX28DRAFT_4509 at 74.737 kb on + strand, within EX28DRAFT_4509 at 74.781 kb on + strand, within EX28DRAFT_4509 at 74.781 kb on + strand, within EX28DRAFT_4509 at 74.781 kb on + strand, within EX28DRAFT_4509 at 74.782 kb on - strand, within EX28DRAFT_4509 at 75.177 kb on - strand, within EX28DRAFT_4509 at 75.177 kb on - strand, within EX28DRAFT_4509 at 75.181 kb on - strand, within EX28DRAFT_4509 at 75.399 kb on - strand at 75.446 kb on + strand at 75.467 kb on + strand at 75.556 kb on + strand at 75.834 kb on - strand, within EX28DRAFT_4510 at 75.921 kb on - strand, within EX28DRAFT_4510 at 75.958 kb on + strand, within EX28DRAFT_4510 at 75.959 kb on - strand, within EX28DRAFT_4510 at 75.959 kb on - strand, within EX28DRAFT_4510 at 76.111 kb on - strand, within EX28DRAFT_4510 at 76.376 kb on + strand, within EX28DRAFT_4510 at 76.376 kb on + strand, within EX28DRAFT_4510 at 76.444 kb on + strand, within EX28DRAFT_4510 at 76.444 kb on + strand, within EX28DRAFT_4510 at 76.445 kb on - strand, within EX28DRAFT_4510 at 76.548 kb on - strand, within EX28DRAFT_4510 at 76.582 kb on + strand, within EX28DRAFT_4510 at 77.025 kb on + strand, within EX28DRAFT_4510 at 77.076 kb on + strand, within EX28DRAFT_4510 at 77.251 kb on - strand, within EX28DRAFT_4510 at 77.381 kb on - strand, within EX28DRAFT_4510 at 77.510 kb on + strand at 77.511 kb on - strand at 77.529 kb on - strand at 77.529 kb on - strand at 77.683 kb on + strand at 77.790 kb on + strand at 77.804 kb on - strand at 78.000 kb on + strand, within EX28DRAFT_4511 at 78.001 kb on - strand, within EX28DRAFT_4511 at 78.107 kb on + strand, within EX28DRAFT_4511 at 78.108 kb on - strand, within EX28DRAFT_4511 at 78.109 kb on + strand, within EX28DRAFT_4511 at 78.194 kb on + strand, within EX28DRAFT_4511 at 78.327 kb on - strand, within EX28DRAFT_4511 at 78.477 kb on - strand, within EX28DRAFT_4511 at 78.605 kb on + strand, within EX28DRAFT_4511 at 78.605 kb on + strand, within EX28DRAFT_4511 at 78.605 kb on + strand, within EX28DRAFT_4511 at 78.605 kb on + strand, within EX28DRAFT_4511 at 78.605 kb on + strand, within EX28DRAFT_4511 at 78.605 kb on + strand, within EX28DRAFT_4511 at 78.655 kb on + strand, within EX28DRAFT_4511
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 74,379 + EX28DRAFT_4509 0.18 +1.2 74,536 + EX28DRAFT_4509 0.31 +0.5 74,629 - EX28DRAFT_4509 0.39 -0.3 74,629 - EX28DRAFT_4509 0.39 -0.1 74,689 + EX28DRAFT_4509 0.44 +0.6 74,689 + EX28DRAFT_4509 0.44 -1.6 74,690 - EX28DRAFT_4509 0.44 +1.3 74,737 + EX28DRAFT_4509 0.48 +0.3 74,781 + EX28DRAFT_4509 0.52 -0.0 74,781 + EX28DRAFT_4509 0.52 +0.6 74,781 + EX28DRAFT_4509 0.52 -0.7 74,782 - EX28DRAFT_4509 0.52 +0.4 75,177 - EX28DRAFT_4509 0.86 -0.0 75,177 - EX28DRAFT_4509 0.86 +1.4 75,181 - EX28DRAFT_4509 0.87 -2.1 75,399 - +0.4 75,446 + +0.1 75,467 + -0.3 75,556 + -1.3 75,834 - EX28DRAFT_4510 0.21 +0.8 75,921 - EX28DRAFT_4510 0.25 -0.6 75,958 + EX28DRAFT_4510 0.26 -2.1 75,959 - EX28DRAFT_4510 0.26 +0.1 75,959 - EX28DRAFT_4510 0.26 +0.4 76,111 - EX28DRAFT_4510 0.33 -0.3 76,376 + EX28DRAFT_4510 0.44 +0.4 76,376 + EX28DRAFT_4510 0.44 +0.5 76,444 + EX28DRAFT_4510 0.47 +0.6 76,444 + EX28DRAFT_4510 0.47 -1.5 76,445 - EX28DRAFT_4510 0.47 +0.3 76,548 - EX28DRAFT_4510 0.52 -1.4 76,582 + EX28DRAFT_4510 0.53 +0.1 77,025 + EX28DRAFT_4510 0.72 +1.6 77,076 + EX28DRAFT_4510 0.75 +0.3 77,251 - EX28DRAFT_4510 0.82 +1.0 77,381 - EX28DRAFT_4510 0.88 -0.8 77,510 + +0.1 77,511 - +0.3 77,529 - +0.1 77,529 - -0.5 77,683 + +0.3 77,790 + -0.1 77,804 - +0.5 78,000 + EX28DRAFT_4511 0.21 -0.8 78,001 - EX28DRAFT_4511 0.21 +0.4 78,107 + EX28DRAFT_4511 0.29 +0.1 78,108 - EX28DRAFT_4511 0.29 +0.3 78,109 + EX28DRAFT_4511 0.29 +1.5 78,194 + EX28DRAFT_4511 0.35 -0.1 78,327 - EX28DRAFT_4511 0.45 +0.2 78,477 - EX28DRAFT_4511 0.56 +0.5 78,605 + EX28DRAFT_4511 0.66 +1.6 78,605 + EX28DRAFT_4511 0.66 +0.5 78,605 + EX28DRAFT_4511 0.66 +0.6 78,605 + EX28DRAFT_4511 0.66 +0.4 78,605 + EX28DRAFT_4511 0.66 +0.8 78,605 + EX28DRAFT_4511 0.66 -1.4 78,655 + EX28DRAFT_4511 0.70 -0.6
Or see this region's nucleotide sequence