Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4506 and EX28DRAFT_4507 are separated by 42 nucleotides EX28DRAFT_4507 and EX28DRAFT_4508 are separated by 39 nucleotides EX28DRAFT_4508 and EX28DRAFT_4509 are separated by 0 nucleotides EX28DRAFT_4509 and EX28DRAFT_4510 are separated by 9 nucleotides
EX28DRAFT_4506: EX28DRAFT_4506 - UbiD family decarboxylase, at 71,752 to 73,245
_4506
EX28DRAFT_4507: EX28DRAFT_4507 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 73,288 to 73,989
_4507
EX28DRAFT_4508: EX28DRAFT_4508 - hypothetical protein, at 74,029 to 74,172
_4508
EX28DRAFT_4509: EX28DRAFT_4509 - fatty oxidation complex, beta subunit FadA, at 74,173 to 75,336
_4509
EX28DRAFT_4510: EX28DRAFT_4510 - fatty oxidation complex, alpha subunit FadB, at 75,346 to 77,662
_4510
Position (kb) 74
75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 73.237 kb on - strand at 73.255 kb on + strand at 73.264 kb on + strand at 73.264 kb on + strand at 73.264 kb on + strand at 73.264 kb on + strand at 73.265 kb on - strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.340 kb on + strand at 73.758 kb on - strand, within EX28DRAFT_4507 at 73.883 kb on - strand, within EX28DRAFT_4507 at 73.883 kb on - strand, within EX28DRAFT_4507 at 73.883 kb on - strand, within EX28DRAFT_4507 at 73.988 kb on - strand at 74.030 kb on + strand at 74.030 kb on + strand at 74.103 kb on + strand, within EX28DRAFT_4508 at 74.104 kb on - strand, within EX28DRAFT_4508 at 74.104 kb on - strand, within EX28DRAFT_4508 at 74.174 kb on + strand at 74.175 kb on - strand at 74.284 kb on - strand at 74.379 kb on + strand, within EX28DRAFT_4509 at 74.536 kb on + strand, within EX28DRAFT_4509 at 74.629 kb on - strand, within EX28DRAFT_4509 at 74.629 kb on - strand, within EX28DRAFT_4509 at 74.689 kb on + strand, within EX28DRAFT_4509 at 74.689 kb on + strand, within EX28DRAFT_4509 at 74.690 kb on - strand, within EX28DRAFT_4509 at 74.737 kb on + strand, within EX28DRAFT_4509 at 74.781 kb on + strand, within EX28DRAFT_4509 at 74.781 kb on + strand, within EX28DRAFT_4509 at 74.781 kb on + strand, within EX28DRAFT_4509 at 74.782 kb on - strand, within EX28DRAFT_4509 at 75.177 kb on - strand, within EX28DRAFT_4509 at 75.177 kb on - strand, within EX28DRAFT_4509 at 75.181 kb on - strand, within EX28DRAFT_4509 at 75.399 kb on - strand at 75.446 kb on + strand at 75.467 kb on + strand at 75.556 kb on + strand at 75.834 kb on - strand, within EX28DRAFT_4510 at 75.921 kb on - strand, within EX28DRAFT_4510 at 75.958 kb on + strand, within EX28DRAFT_4510 at 75.959 kb on - strand, within EX28DRAFT_4510 at 75.959 kb on - strand, within EX28DRAFT_4510 at 76.111 kb on - strand, within EX28DRAFT_4510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 73,237 - -0.7 73,255 + -0.2 73,264 + +1.0 73,264 + -0.1 73,264 + +1.3 73,264 + -0.2 73,265 - -0.6 73,340 + -2.1 73,340 + -0.7 73,340 + -4.3 73,340 + -3.6 73,340 + -2.5 73,340 + -1.8 73,758 - EX28DRAFT_4507 0.67 -1.1 73,883 - EX28DRAFT_4507 0.85 +0.2 73,883 - EX28DRAFT_4507 0.85 -0.7 73,883 - EX28DRAFT_4507 0.85 -1.4 73,988 - -0.2 74,030 + -0.3 74,030 + +0.1 74,103 + EX28DRAFT_4508 0.51 +0.5 74,104 - EX28DRAFT_4508 0.52 -0.6 74,104 - EX28DRAFT_4508 0.52 +0.1 74,174 + +0.2 74,175 - +0.3 74,284 - -0.0 74,379 + EX28DRAFT_4509 0.18 +1.2 74,536 + EX28DRAFT_4509 0.31 +0.5 74,629 - EX28DRAFT_4509 0.39 -0.3 74,629 - EX28DRAFT_4509 0.39 -0.1 74,689 + EX28DRAFT_4509 0.44 +0.6 74,689 + EX28DRAFT_4509 0.44 -1.6 74,690 - EX28DRAFT_4509 0.44 +1.3 74,737 + EX28DRAFT_4509 0.48 +0.3 74,781 + EX28DRAFT_4509 0.52 -0.0 74,781 + EX28DRAFT_4509 0.52 +0.6 74,781 + EX28DRAFT_4509 0.52 -0.7 74,782 - EX28DRAFT_4509 0.52 +0.4 75,177 - EX28DRAFT_4509 0.86 -0.0 75,177 - EX28DRAFT_4509 0.86 +1.4 75,181 - EX28DRAFT_4509 0.87 -2.1 75,399 - +0.4 75,446 + +0.1 75,467 + -0.3 75,556 + -1.3 75,834 - EX28DRAFT_4510 0.21 +0.8 75,921 - EX28DRAFT_4510 0.25 -0.6 75,958 + EX28DRAFT_4510 0.26 -2.1 75,959 - EX28DRAFT_4510 0.26 +0.1 75,959 - EX28DRAFT_4510 0.26 +0.4 76,111 - EX28DRAFT_4510 0.33 -0.3
Or see this region's nucleotide sequence