Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4486

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4484 and EX28DRAFT_4485 are separated by 51 nucleotidesEX28DRAFT_4485 and EX28DRAFT_4486 are separated by 163 nucleotidesEX28DRAFT_4486 and EX28DRAFT_4487 are separated by 27 nucleotides EX28DRAFT_4484: EX28DRAFT_4484 - rarD protein, at 50,233 to 51,129 _4484 EX28DRAFT_4485: EX28DRAFT_4485 - uncharacterized domain 1, at 51,181 to 51,648 _4485 EX28DRAFT_4486: EX28DRAFT_4486 - Outer membrane phospholipase A, at 51,812 to 52,681 _4486 EX28DRAFT_4487: EX28DRAFT_4487 - ATP-dependent DNA helicase RecQ, at 52,709 to 54,601 _4487 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.844 kb on + strand, within EX28DRAFT_4484at 50.845 kb on - strand, within EX28DRAFT_4484at 50.860 kb on - strand, within EX28DRAFT_4484at 50.983 kb on - strand, within EX28DRAFT_4484at 51.053 kb on + strandat 51.054 kb on - strandat 51.075 kb on + strandat 51.075 kb on + strandat 51.097 kb on + strandat 51.098 kb on - strandat 51.192 kb on + strandat 51.192 kb on + strandat 51.192 kb on + strandat 51.192 kb on + strandat 51.193 kb on - strandat 51.193 kb on - strandat 51.193 kb on - strandat 51.193 kb on - strandat 51.193 kb on - strandat 51.194 kb on + strandat 51.194 kb on + strandat 51.194 kb on + strandat 51.194 kb on + strandat 51.194 kb on + strandat 51.195 kb on - strandat 51.195 kb on - strandat 51.195 kb on - strandat 51.195 kb on - strandat 51.195 kb on - strandat 51.218 kb on + strandat 51.218 kb on + strandat 51.218 kb on + strandat 51.218 kb on + strandat 51.218 kb on + strandat 51.218 kb on + strandat 51.218 kb on + strandat 51.219 kb on - strandat 51.219 kb on - strandat 51.219 kb on - strandat 51.238 kb on + strand, within EX28DRAFT_4485at 51.239 kb on - strand, within EX28DRAFT_4485at 51.239 kb on - strand, within EX28DRAFT_4485at 51.265 kb on - strand, within EX28DRAFT_4485at 51.576 kb on + strand, within EX28DRAFT_4485at 51.585 kb on + strand, within EX28DRAFT_4485at 51.585 kb on + strand, within EX28DRAFT_4485at 51.586 kb on - strand, within EX28DRAFT_4485at 51.664 kb on + strandat 51.664 kb on + strandat 51.753 kb on - strandat 51.753 kb on - strandat 51.768 kb on + strandat 51.769 kb on - strandat 51.773 kb on - strandat 51.773 kb on - strandat 51.773 kb on - strandat 51.773 kb on - strandat 51.780 kb on + strandat 51.821 kb on + strandat 51.821 kb on + strandat 51.866 kb on + strandat 51.986 kb on + strand, within EX28DRAFT_4486at 51.987 kb on - strand, within EX28DRAFT_4486at 51.987 kb on - strand, within EX28DRAFT_4486at 51.995 kb on + strand, within EX28DRAFT_4486at 51.996 kb on - strand, within EX28DRAFT_4486at 51.996 kb on - strand, within EX28DRAFT_4486at 52.030 kb on - strand, within EX28DRAFT_4486at 52.037 kb on + strand, within EX28DRAFT_4486at 52.038 kb on - strand, within EX28DRAFT_4486at 52.211 kb on + strand, within EX28DRAFT_4486at 52.212 kb on - strand, within EX28DRAFT_4486at 52.212 kb on - strand, within EX28DRAFT_4486at 52.212 kb on - strand, within EX28DRAFT_4486at 52.291 kb on + strand, within EX28DRAFT_4486at 52.346 kb on + strand, within EX28DRAFT_4486at 52.347 kb on - strand, within EX28DRAFT_4486at 52.442 kb on + strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.443 kb on - strand, within EX28DRAFT_4486at 52.445 kb on - strand, within EX28DRAFT_4486at 52.445 kb on - strand, within EX28DRAFT_4486at 52.445 kb on - strand, within EX28DRAFT_4486at 52.454 kb on + strand, within EX28DRAFT_4486at 52.511 kb on + strand, within EX28DRAFT_4486at 52.512 kb on - strand, within EX28DRAFT_4486at 52.551 kb on + strand, within EX28DRAFT_4486at 52.557 kb on - strand, within EX28DRAFT_4486at 52.584 kb on - strand, within EX28DRAFT_4486at 52.585 kb on + strand, within EX28DRAFT_4486at 52.586 kb on - strand, within EX28DRAFT_4486at 52.586 kb on - strand, within EX28DRAFT_4486at 52.595 kb on + strandat 52.596 kb on - strandat 52.625 kb on + strandat 52.672 kb on + strandat 52.789 kb on - strandat 52.941 kb on - strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.129 kb on + strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.130 kb on - strand, within EX28DRAFT_4487at 53.221 kb on + strand, within EX28DRAFT_4487at 53.221 kb on + strand, within EX28DRAFT_4487at 53.222 kb on - strand, within EX28DRAFT_4487at 53.255 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.375 kb on + strand, within EX28DRAFT_4487at 53.378 kb on - strand, within EX28DRAFT_4487at 53.415 kb on - strand, within EX28DRAFT_4487at 53.416 kb on + strand, within EX28DRAFT_4487at 53.416 kb on + strand, within EX28DRAFT_4487at 53.416 kb on + strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.417 kb on - strand, within EX28DRAFT_4487at 53.459 kb on + strand, within EX28DRAFT_4487at 53.496 kb on - strand, within EX28DRAFT_4487

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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50,844 + EX28DRAFT_4484 0.68 -1.3
50,845 - EX28DRAFT_4484 0.68 +0.2
50,860 - EX28DRAFT_4484 0.70 +1.4
50,983 - EX28DRAFT_4484 0.84 +0.3
51,053 + -0.3
51,054 - +0.2
51,075 + -0.4
51,075 + +0.0
51,097 + +0.9
51,098 - +0.2
51,192 + -0.1
51,192 + -0.8
51,192 + +0.7
51,192 + -0.4
51,193 - +0.7
51,193 - -0.2
51,193 - +0.5
51,193 - +1.0
51,193 - +0.2
51,194 + +0.7
51,194 + +0.1
51,194 + -0.5
51,194 + -0.8
51,194 + +0.6
51,195 - +1.0
51,195 - +0.1
51,195 - +0.1
51,195 - +0.6
51,195 - +0.3
51,218 + -0.0
51,218 + -0.4
51,218 + +0.9
51,218 + -0.4
51,218 + -0.4
51,218 + -1.5
51,218 + +0.5
51,219 - +0.2
51,219 - +0.3
51,219 - +0.8
51,238 + EX28DRAFT_4485 0.12 -0.0
51,239 - EX28DRAFT_4485 0.12 +1.9
51,239 - EX28DRAFT_4485 0.12 +0.4
51,265 - EX28DRAFT_4485 0.18 +1.0
51,576 + EX28DRAFT_4485 0.84 +0.4
51,585 + EX28DRAFT_4485 0.86 +0.2
51,585 + EX28DRAFT_4485 0.86 -0.6
51,586 - EX28DRAFT_4485 0.87 -0.3
51,664 + +0.7
51,664 + -2.1
51,753 - +0.4
51,753 - -0.5
51,768 + +0.2
51,769 - +0.9
51,773 - +0.4
51,773 - +1.3
51,773 - -0.2
51,773 - -0.3
51,780 + +0.2
51,821 + +0.8
51,821 + +1.2
51,866 + +3.2
51,986 + EX28DRAFT_4486 0.20 +0.9
51,987 - EX28DRAFT_4486 0.20 -0.8
51,987 - EX28DRAFT_4486 0.20 +0.2
51,995 + EX28DRAFT_4486 0.21 +1.6
51,996 - EX28DRAFT_4486 0.21 +0.4
51,996 - EX28DRAFT_4486 0.21 +0.3
52,030 - EX28DRAFT_4486 0.25 +0.9
52,037 + EX28DRAFT_4486 0.26 +0.4
52,038 - EX28DRAFT_4486 0.26 +0.4
52,211 + EX28DRAFT_4486 0.46 -0.6
52,212 - EX28DRAFT_4486 0.46 +1.4
52,212 - EX28DRAFT_4486 0.46 +0.3
52,212 - EX28DRAFT_4486 0.46 +0.5
52,291 + EX28DRAFT_4486 0.55 -0.3
52,346 + EX28DRAFT_4486 0.61 +0.8
52,347 - EX28DRAFT_4486 0.61 +0.4
52,442 + EX28DRAFT_4486 0.72 +0.0
52,443 - EX28DRAFT_4486 0.73 -1.2
52,443 - EX28DRAFT_4486 0.73 +1.1
52,443 - EX28DRAFT_4486 0.73 +0.3
52,443 - EX28DRAFT_4486 0.73 -0.3
52,445 - EX28DRAFT_4486 0.73 +0.7
52,445 - EX28DRAFT_4486 0.73 +0.8
52,445 - EX28DRAFT_4486 0.73 +0.1
52,454 + EX28DRAFT_4486 0.74 -0.3
52,511 + EX28DRAFT_4486 0.80 -1.9
52,512 - EX28DRAFT_4486 0.80 -0.6
52,551 + EX28DRAFT_4486 0.85 +0.1
52,557 - EX28DRAFT_4486 0.86 +1.4
52,584 - EX28DRAFT_4486 0.89 +0.3
52,585 + EX28DRAFT_4486 0.89 +0.2
52,586 - EX28DRAFT_4486 0.89 -1.8
52,586 - EX28DRAFT_4486 0.89 +1.3
52,595 + +0.3
52,596 - -1.0
52,625 + +0.3
52,672 + +0.1
52,789 - +0.2
52,941 - EX28DRAFT_4487 0.12 +0.8
53,129 + EX28DRAFT_4487 0.22 -0.1
53,129 + EX28DRAFT_4487 0.22 +0.9
53,129 + EX28DRAFT_4487 0.22 -0.2
53,129 + EX28DRAFT_4487 0.22 +0.1
53,130 - EX28DRAFT_4487 0.22 -0.3
53,130 - EX28DRAFT_4487 0.22 -0.2
53,130 - EX28DRAFT_4487 0.22 -0.5
53,130 - EX28DRAFT_4487 0.22 +0.2
53,221 + EX28DRAFT_4487 0.27 +2.0
53,221 + EX28DRAFT_4487 0.27 -0.3
53,222 - EX28DRAFT_4487 0.27 -2.0
53,255 + EX28DRAFT_4487 0.29 -0.7
53,375 + EX28DRAFT_4487 0.35 -2.5
53,375 + EX28DRAFT_4487 0.35 +0.3
53,375 + EX28DRAFT_4487 0.35 -0.5
53,375 + EX28DRAFT_4487 0.35 +2.7
53,378 - EX28DRAFT_4487 0.35 -0.1
53,415 - EX28DRAFT_4487 0.37 +0.5
53,416 + EX28DRAFT_4487 0.37 -0.1
53,416 + EX28DRAFT_4487 0.37 -3.6
53,416 + EX28DRAFT_4487 0.37 +0.5
53,417 - EX28DRAFT_4487 0.37 +1.1
53,417 - EX28DRAFT_4487 0.37 +2.6
53,417 - EX28DRAFT_4487 0.37 +0.8
53,417 - EX28DRAFT_4487 0.37 +0.4
53,417 - EX28DRAFT_4487 0.37 +0.3
53,417 - EX28DRAFT_4487 0.37 +0.4
53,459 + EX28DRAFT_4487 0.40 +1.2
53,496 - EX28DRAFT_4487 0.42 -0.1

Or see this region's nucleotide sequence