Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4479 and EX28DRAFT_4480 overlap by 4 nucleotides EX28DRAFT_4480 and EX28DRAFT_4481 overlap by 1 nucleotides EX28DRAFT_4481 and EX28DRAFT_4482 are separated by 107 nucleotides
EX28DRAFT_4479: EX28DRAFT_4479 - Uncharacterized protein conserved in bacteria, at 44,249 to 44,956
_4479
EX28DRAFT_4480: EX28DRAFT_4480 - tyrosine recombinase XerC, at 44,953 to 45,855
_4480
EX28DRAFT_4481: EX28DRAFT_4481 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 45,855 to 46,571
_4481
EX28DRAFT_4482: EX28DRAFT_4482 - ATP-dependent DNA helicase UvrD (EC 3.6.1.-), at 46,679 to 48,841
_4482
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.791 kb on + strand at 45.865 kb on - strand at 46.059 kb on + strand, within EX28DRAFT_4481 at 46.300 kb on - strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.359 kb on + strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.360 kb on - strand, within EX28DRAFT_4481 at 46.382 kb on + strand, within EX28DRAFT_4481 at 46.567 kb on + strand at 46.567 kb on + strand at 46.568 kb on - strand at 46.569 kb on + strand at 46.569 kb on + strand at 46.569 kb on + strand at 46.570 kb on - strand at 46.570 kb on - strand at 46.583 kb on - strand at 46.588 kb on - strand at 46.661 kb on + strand at 46.662 kb on - strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.664 kb on + strand at 46.665 kb on - strand at 46.665 kb on - strand at 46.665 kb on - strand at 46.708 kb on + strand at 47.112 kb on - strand, within EX28DRAFT_4482
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 45,791 + -1.8 45,865 - +0.1 46,059 + EX28DRAFT_4481 0.28 +0.2 46,300 - EX28DRAFT_4481 0.62 +0.4 46,359 + EX28DRAFT_4481 0.70 +0.4 46,359 + EX28DRAFT_4481 0.70 +1.7 46,359 + EX28DRAFT_4481 0.70 +0.3 46,360 - EX28DRAFT_4481 0.70 +0.8 46,360 - EX28DRAFT_4481 0.70 +0.2 46,360 - EX28DRAFT_4481 0.70 +0.6 46,360 - EX28DRAFT_4481 0.70 +0.9 46,382 + EX28DRAFT_4481 0.74 +0.4 46,567 + +1.4 46,567 + +0.4 46,568 - +0.7 46,569 + +0.1 46,569 + +0.0 46,569 + -0.1 46,570 - +1.2 46,570 - +0.4 46,583 - -0.6 46,588 - -0.0 46,661 + +0.8 46,662 - +0.6 46,664 + +0.6 46,664 + +0.4 46,664 + +0.1 46,664 + +2.2 46,664 + +0.6 46,664 + -1.1 46,665 - +0.3 46,665 - -1.5 46,665 - +1.2 46,708 + -0.3 47,112 - EX28DRAFT_4482 0.20 -3.5
Or see this region's nucleotide sequence