Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4404 and EX28DRAFT_4405 are separated by 9 nucleotides EX28DRAFT_4405 and EX28DRAFT_4406 are separated by 94 nucleotides EX28DRAFT_4406 and EX28DRAFT_4407 are separated by 198 nucleotides
EX28DRAFT_4404: EX28DRAFT_4404 - ATP-dependent protease HslVU, ATPase subunit, at 66,203 to 67,537
_4404
EX28DRAFT_4405: EX28DRAFT_4405 - ATP-dependent protease HslVU, peptidase subunit, at 67,547 to 68,077
_4405
EX28DRAFT_4406: EX28DRAFT_4406 - cell division protein FtsN, at 68,172 to 69,065
_4406
EX28DRAFT_4407: EX28DRAFT_4407 - Transcriptional regulators, at 69,264 to 70,289
_4407
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.266 kb on + strand, within EX28DRAFT_4404 at 67.267 kb on - strand, within EX28DRAFT_4404 at 67.267 kb on - strand, within EX28DRAFT_4404 at 67.267 kb on - strand, within EX28DRAFT_4404 at 67.426 kb on + strand at 67.548 kb on + strand at 67.549 kb on - strand at 67.593 kb on + strand at 67.593 kb on + strand at 67.593 kb on + strand at 67.593 kb on + strand at 67.594 kb on - strand at 68.003 kb on - strand, within EX28DRAFT_4405 at 68.063 kb on + strand at 68.063 kb on + strand at 68.063 kb on + strand at 68.064 kb on - strand at 68.064 kb on - strand at 68.064 kb on - strand at 68.064 kb on - strand at 68.066 kb on + strand at 68.066 kb on + strand at 68.066 kb on + strand at 68.067 kb on - strand at 68.142 kb on - strand at 68.148 kb on + strand at 68.149 kb on - strand at 68.149 kb on - strand at 68.300 kb on + strand, within EX28DRAFT_4406 at 68.300 kb on + strand, within EX28DRAFT_4406 at 68.301 kb on - strand, within EX28DRAFT_4406 at 68.301 kb on - strand, within EX28DRAFT_4406 at 68.486 kb on + strand, within EX28DRAFT_4406 at 68.600 kb on - strand, within EX28DRAFT_4406 at 69.185 kb on - strand at 69.189 kb on - strand at 69.213 kb on - strand at 69.216 kb on + strand at 69.217 kb on - strand at 69.261 kb on - strand at 69.261 kb on - strand at 69.265 kb on + strand at 69.443 kb on + strand, within EX28DRAFT_4407 at 69.443 kb on + strand, within EX28DRAFT_4407 at 69.444 kb on - strand, within EX28DRAFT_4407 at 69.507 kb on + strand, within EX28DRAFT_4407 at 69.608 kb on + strand, within EX28DRAFT_4407 at 69.608 kb on + strand, within EX28DRAFT_4407 at 69.608 kb on + strand, within EX28DRAFT_4407 at 69.628 kb on + strand, within EX28DRAFT_4407 at 69.628 kb on + strand, within EX28DRAFT_4407 at 69.737 kb on + strand, within EX28DRAFT_4407 at 69.738 kb on - strand, within EX28DRAFT_4407 at 69.738 kb on - strand, within EX28DRAFT_4407
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 67,266 + EX28DRAFT_4404 0.80 +0.1 67,267 - EX28DRAFT_4404 0.80 -1.4 67,267 - EX28DRAFT_4404 0.80 -0.2 67,267 - EX28DRAFT_4404 0.80 -0.2 67,426 + -2.0 67,548 + +0.2 67,549 - +0.6 67,593 + -0.2 67,593 + -2.3 67,593 + -2.6 67,593 + -0.2 67,594 - +0.2 68,003 - EX28DRAFT_4405 0.86 -2.0 68,063 + -0.3 68,063 + -1.3 68,063 + +0.0 68,064 - +0.2 68,064 - +0.5 68,064 - -0.1 68,064 - -1.0 68,066 + -0.1 68,066 + +0.4 68,066 + -0.5 68,067 - +0.4 68,142 - +0.5 68,148 + +0.7 68,149 - +0.2 68,149 - -0.3 68,300 + EX28DRAFT_4406 0.14 +0.6 68,300 + EX28DRAFT_4406 0.14 +2.6 68,301 - EX28DRAFT_4406 0.14 +1.8 68,301 - EX28DRAFT_4406 0.14 +1.7 68,486 + EX28DRAFT_4406 0.35 +0.0 68,600 - EX28DRAFT_4406 0.48 -0.1 69,185 - -0.9 69,189 - +0.2 69,213 - +1.0 69,216 + -0.2 69,217 - +0.2 69,261 - +0.5 69,261 - -0.6 69,265 + -0.1 69,443 + EX28DRAFT_4407 0.17 -0.8 69,443 + EX28DRAFT_4407 0.17 -0.1 69,444 - EX28DRAFT_4407 0.18 -2.2 69,507 + EX28DRAFT_4407 0.24 +0.3 69,608 + EX28DRAFT_4407 0.34 +0.8 69,608 + EX28DRAFT_4407 0.34 -0.8 69,608 + EX28DRAFT_4407 0.34 -0.8 69,628 + EX28DRAFT_4407 0.35 -0.8 69,628 + EX28DRAFT_4407 0.35 -0.8 69,737 + EX28DRAFT_4407 0.46 +0.3 69,738 - EX28DRAFT_4407 0.46 +0.2 69,738 - EX28DRAFT_4407 0.46 -0.2
Or see this region's nucleotide sequence