Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4206 and EX28DRAFT_4207 overlap by 8 nucleotides EX28DRAFT_4207 and EX28DRAFT_4208 overlap by 4 nucleotides EX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotides EX28DRAFT_4209 and EX28DRAFT_4210 overlap by 4 nucleotides
EX28DRAFT_4206: EX28DRAFT_4206 - Uncharacterized enzyme of phosphonate metabolism, at 13,656 to 14,720
_4206
EX28DRAFT_4207: EX28DRAFT_4207 - Uncharacterized enzyme of phosphonate metabolism, at 14,713 to 15,558
_4207
EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310
_4208
EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000
_4209
EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133
_4210
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 14.656 kb on - strand at 14.723 kb on + strand at 14.724 kb on - strand at 14.724 kb on - strand at 14.787 kb on + strand at 14.788 kb on - strand at 14.788 kb on - strand at 14.992 kb on - strand, within EX28DRAFT_4207 at 14.992 kb on - strand, within EX28DRAFT_4207 at 15.223 kb on + strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.254 kb on - strand, within EX28DRAFT_4207 at 15.353 kb on - strand, within EX28DRAFT_4207 at 15.367 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.578 kb on + strand at 15.578 kb on + strand at 15.742 kb on - strand, within EX28DRAFT_4208 at 16.055 kb on + strand, within EX28DRAFT_4208 at 16.309 kb on - strand at 16.309 kb on - strand at 16.331 kb on - strand at 16.331 kb on - strand at 16.339 kb on + strand at 16.340 kb on - strand at 16.340 kb on - strand at 16.343 kb on + strand at 16.344 kb on - strand at 16.344 kb on - strand at 16.394 kb on + strand, within EX28DRAFT_4209 at 16.395 kb on - strand, within EX28DRAFT_4209 at 16.491 kb on + strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.566 kb on - strand, within EX28DRAFT_4209 at 16.831 kb on + strand, within EX28DRAFT_4209 at 16.951 kb on + strand at 17.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 14,656 - -0.6 14,723 + +0.6 14,724 - -0.5 14,724 - -2.9 14,787 + +1.1 14,788 - -0.7 14,788 - +0.3 14,992 - EX28DRAFT_4207 0.33 +0.5 14,992 - EX28DRAFT_4207 0.33 +0.0 15,223 + EX28DRAFT_4207 0.60 -2.5 15,224 - EX28DRAFT_4207 0.60 -1.0 15,224 - EX28DRAFT_4207 0.60 +0.7 15,224 - EX28DRAFT_4207 0.60 -0.3 15,224 - EX28DRAFT_4207 0.60 -0.3 15,254 - EX28DRAFT_4207 0.64 +0.0 15,353 - EX28DRAFT_4207 0.76 +0.1 15,367 + EX28DRAFT_4207 0.77 -0.1 15,460 + EX28DRAFT_4207 0.88 +0.4 15,460 + EX28DRAFT_4207 0.88 +0.8 15,578 + -1.4 15,578 + +1.1 15,742 - EX28DRAFT_4208 0.25 +0.6 16,055 + EX28DRAFT_4208 0.66 -1.4 16,309 - -0.3 16,309 - -0.5 16,331 - +0.4 16,331 - +0.3 16,339 + +0.1 16,340 - -1.9 16,340 - +0.3 16,343 + -0.5 16,344 - +0.3 16,344 - +0.4 16,394 + EX28DRAFT_4209 0.11 +0.1 16,395 - EX28DRAFT_4209 0.11 +0.5 16,491 + EX28DRAFT_4209 0.25 -0.2 16,492 - EX28DRAFT_4209 0.25 -0.5 16,492 - EX28DRAFT_4209 0.25 -0.1 16,565 + EX28DRAFT_4209 0.36 -0.2 16,565 + EX28DRAFT_4209 0.36 -1.0 16,565 + EX28DRAFT_4209 0.36 +0.7 16,565 + EX28DRAFT_4209 0.36 +1.0 16,566 - EX28DRAFT_4209 0.36 -1.0 16,831 + EX28DRAFT_4209 0.75 -0.7 16,951 + -1.1 17,101 + +0.6
Or see this region's nucleotide sequence