Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4197

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4195 and EX28DRAFT_4196 are separated by 51 nucleotidesEX28DRAFT_4196 and EX28DRAFT_4197 overlap by 4 nucleotidesEX28DRAFT_4197 and EX28DRAFT_4198 are separated by 595 nucleotides EX28DRAFT_4195: EX28DRAFT_4195 - 2-keto-3-deoxygluconate transporter, at 3,361 to 4,353 _4195 EX28DRAFT_4196: EX28DRAFT_4196 - YjcZ-like protein, at 4,405 to 5,280 _4196 EX28DRAFT_4197: EX28DRAFT_4197 - Dynamin family, at 5,277 to 7,631 _4197 EX28DRAFT_4198: EX28DRAFT_4198 - alkylphosphonate utilization operon protein PhnA, at 8,227 to 8,562 _4198 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 4.286 kb on - strandat 4.306 kb on - strandat 4.468 kb on - strandat 4.563 kb on + strand, within EX28DRAFT_4196at 4.564 kb on - strand, within EX28DRAFT_4196at 4.655 kb on + strand, within EX28DRAFT_4196at 4.655 kb on + strand, within EX28DRAFT_4196at 4.764 kb on + strand, within EX28DRAFT_4196at 4.902 kb on + strand, within EX28DRAFT_4196at 5.233 kb on - strandat 5.235 kb on + strandat 5.236 kb on - strandat 5.361 kb on - strandat 5.536 kb on - strand, within EX28DRAFT_4197at 5.558 kb on + strand, within EX28DRAFT_4197at 5.559 kb on - strand, within EX28DRAFT_4197at 5.568 kb on - strand, within EX28DRAFT_4197at 5.568 kb on - strand, within EX28DRAFT_4197at 5.580 kb on + strand, within EX28DRAFT_4197at 5.580 kb on + strand, within EX28DRAFT_4197at 5.580 kb on + strand, within EX28DRAFT_4197at 5.581 kb on - strand, within EX28DRAFT_4197at 5.597 kb on + strand, within EX28DRAFT_4197at 5.603 kb on - strand, within EX28DRAFT_4197at 5.623 kb on + strand, within EX28DRAFT_4197at 5.623 kb on + strand, within EX28DRAFT_4197at 5.623 kb on + strand, within EX28DRAFT_4197at 5.736 kb on - strand, within EX28DRAFT_4197at 5.759 kb on + strand, within EX28DRAFT_4197at 5.880 kb on - strand, within EX28DRAFT_4197at 5.880 kb on - strand, within EX28DRAFT_4197at 6.302 kb on - strand, within EX28DRAFT_4197at 6.322 kb on + strand, within EX28DRAFT_4197at 6.452 kb on + strand, within EX28DRAFT_4197at 6.453 kb on - strand, within EX28DRAFT_4197at 6.592 kb on + strand, within EX28DRAFT_4197at 6.635 kb on + strand, within EX28DRAFT_4197at 6.648 kb on + strand, within EX28DRAFT_4197at 6.716 kb on + strand, within EX28DRAFT_4197at 6.794 kb on + strand, within EX28DRAFT_4197at 6.805 kb on + strand, within EX28DRAFT_4197at 6.974 kb on + strand, within EX28DRAFT_4197at 6.975 kb on - strand, within EX28DRAFT_4197at 7.134 kb on - strand, within EX28DRAFT_4197at 7.134 kb on - strand, within EX28DRAFT_4197at 7.226 kb on + strand, within EX28DRAFT_4197at 7.226 kb on + strand, within EX28DRAFT_4197at 7.227 kb on - strand, within EX28DRAFT_4197at 7.227 kb on - strand, within EX28DRAFT_4197at 7.413 kb on + strandat 7.413 kb on + strandat 7.506 kb on - strandat 7.508 kb on + strandat 7.557 kb on - strandat 7.581 kb on + strandat 7.635 kb on - strandat 7.635 kb on - strandat 7.669 kb on - strandat 7.685 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.690 kb on - strandat 7.690 kb on - strandat 7.705 kb on - strandat 7.793 kb on - strandat 7.793 kb on - strandat 7.793 kb on - strandat 7.793 kb on - strandat 7.843 kb on - strandat 7.859 kb on + strandat 7.869 kb on - strandat 7.872 kb on + strandat 7.893 kb on - strandat 7.896 kb on - strandat 7.896 kb on - strandat 7.913 kb on + strandat 7.942 kb on + strandat 7.942 kb on + strandat 7.942 kb on + strandat 7.943 kb on - strandat 7.943 kb on - strandat 8.049 kb on - strandat 8.049 kb on - strandat 8.049 kb on - strandat 8.059 kb on + strandat 8.060 kb on - strandat 8.148 kb on + strandat 8.149 kb on - strandat 8.149 kb on - strandat 8.182 kb on + strandat 8.182 kb on + strandat 8.182 kb on + strandat 8.183 kb on - strandat 8.183 kb on - strandat 8.226 kb on + strandat 8.269 kb on + strand, within EX28DRAFT_4198at 8.269 kb on + strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.277 kb on + strand, within EX28DRAFT_4198at 8.405 kb on + strand, within EX28DRAFT_4198at 8.405 kb on + strand, within EX28DRAFT_4198at 8.406 kb on - strand, within EX28DRAFT_4198at 8.494 kb on - strand, within EX28DRAFT_4198at 8.565 kb on + strandat 8.607 kb on - strandat 8.607 kb on - strandat 8.612 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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4,286 - +0.2
4,306 - +0.8
4,468 - -0.3
4,563 + EX28DRAFT_4196 0.18 +0.1
4,564 - EX28DRAFT_4196 0.18 +1.0
4,655 + EX28DRAFT_4196 0.29 +0.7
4,655 + EX28DRAFT_4196 0.29 +0.0
4,764 + EX28DRAFT_4196 0.41 +0.2
4,902 + EX28DRAFT_4196 0.57 -0.4
5,233 - +0.3
5,235 + +0.1
5,236 - -0.5
5,361 - +1.4
5,536 - EX28DRAFT_4197 0.11 +0.2
5,558 + EX28DRAFT_4197 0.12 -1.9
5,559 - EX28DRAFT_4197 0.12 -0.6
5,568 - EX28DRAFT_4197 0.12 -0.5
5,568 - EX28DRAFT_4197 0.12 -2.5
5,580 + EX28DRAFT_4197 0.13 +0.4
5,580 + EX28DRAFT_4197 0.13 -0.2
5,580 + EX28DRAFT_4197 0.13 +0.8
5,581 - EX28DRAFT_4197 0.13 +2.6
5,597 + EX28DRAFT_4197 0.14 -1.2
5,603 - EX28DRAFT_4197 0.14 +0.9
5,623 + EX28DRAFT_4197 0.15 -0.3
5,623 + EX28DRAFT_4197 0.15 -0.5
5,623 + EX28DRAFT_4197 0.15 +0.6
5,736 - EX28DRAFT_4197 0.19 -0.4
5,759 + EX28DRAFT_4197 0.20 +0.6
5,880 - EX28DRAFT_4197 0.26 +0.1
5,880 - EX28DRAFT_4197 0.26 -0.2
6,302 - EX28DRAFT_4197 0.44 +0.0
6,322 + EX28DRAFT_4197 0.44 -0.9
6,452 + EX28DRAFT_4197 0.50 -0.5
6,453 - EX28DRAFT_4197 0.50 +0.3
6,592 + EX28DRAFT_4197 0.56 +0.3
6,635 + EX28DRAFT_4197 0.58 +0.1
6,648 + EX28DRAFT_4197 0.58 -0.8
6,716 + EX28DRAFT_4197 0.61 -0.5
6,794 + EX28DRAFT_4197 0.64 -0.1
6,805 + EX28DRAFT_4197 0.65 -0.3
6,974 + EX28DRAFT_4197 0.72 +0.8
6,975 - EX28DRAFT_4197 0.72 +1.8
7,134 - EX28DRAFT_4197 0.79 +0.8
7,134 - EX28DRAFT_4197 0.79 -1.2
7,226 + EX28DRAFT_4197 0.83 -0.3
7,226 + EX28DRAFT_4197 0.83 -0.5
7,227 - EX28DRAFT_4197 0.83 +0.4
7,227 - EX28DRAFT_4197 0.83 -0.1
7,413 + +0.3
7,413 + -0.5
7,506 - -0.2
7,508 + -2.5
7,557 - -0.7
7,581 + -0.4
7,635 - +0.5
7,635 - +0.0
7,669 - +0.8
7,685 + -0.1
7,689 + -0.0
7,689 + +0.4
7,689 + +1.1
7,690 - +1.3
7,690 - -0.4
7,705 - +1.3
7,793 - +0.4
7,793 - -2.6
7,793 - +1.2
7,793 - +1.7
7,843 - +0.8
7,859 + -0.1
7,869 - -0.1
7,872 + -1.1
7,893 - -2.1
7,896 - +0.5
7,896 - +0.6
7,913 + -0.7
7,942 + +2.4
7,942 + -0.1
7,942 + +0.0
7,943 - -0.4
7,943 - +0.6
8,049 - +0.3
8,049 - -0.7
8,049 - +0.6
8,059 + -0.3
8,060 - +0.1
8,148 + -0.2
8,149 - -0.7
8,149 - -0.2
8,182 + +0.2
8,182 + +2.1
8,182 + +0.6
8,183 - +0.0
8,183 - +0.2
8,226 + -1.2
8,269 + EX28DRAFT_4198 0.12 +0.3
8,269 + EX28DRAFT_4198 0.12 -0.2
8,270 - EX28DRAFT_4198 0.13 +0.7
8,270 - EX28DRAFT_4198 0.13 +0.8
8,270 - EX28DRAFT_4198 0.13 +1.2
8,270 - EX28DRAFT_4198 0.13 +0.5
8,270 - EX28DRAFT_4198 0.13 +0.9
8,277 + EX28DRAFT_4198 0.15 -0.9
8,405 + EX28DRAFT_4198 0.53 +1.5
8,405 + EX28DRAFT_4198 0.53 +0.6
8,406 - EX28DRAFT_4198 0.53 +0.0
8,494 - EX28DRAFT_4198 0.79 +0.1
8,565 + -0.9
8,607 - +0.1
8,607 - -0.0
8,612 + -0.8

Or see this region's nucleotide sequence