Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4107

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4106 and EX28DRAFT_4107 are separated by 69 nucleotidesEX28DRAFT_4107 and EX28DRAFT_4108 are separated by 337 nucleotides EX28DRAFT_4106: EX28DRAFT_4106 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 77,939 to 79,003 _4106 EX28DRAFT_4107: EX28DRAFT_4107 - hypothetical protein, at 79,073 to 79,462 _4107 EX28DRAFT_4108: EX28DRAFT_4108 - Predicted permease, at 79,800 to 80,849 _4108 Position (kb) 79 80Strain fitness (log2 ratio) -2 -1 0 1at 78.079 kb on + strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.080 kb on - strand, within EX28DRAFT_4106at 78.090 kb on + strand, within EX28DRAFT_4106at 78.485 kb on + strand, within EX28DRAFT_4106at 78.486 kb on - strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.490 kb on - strand, within EX28DRAFT_4106at 78.490 kb on - strand, within EX28DRAFT_4106at 78.522 kb on + strand, within EX28DRAFT_4106at 78.523 kb on - strand, within EX28DRAFT_4106at 78.526 kb on - strand, within EX28DRAFT_4106at 78.660 kb on - strand, within EX28DRAFT_4106at 78.694 kb on + strand, within EX28DRAFT_4106at 78.804 kb on - strand, within EX28DRAFT_4106at 79.012 kb on - strandat 79.071 kb on + strandat 79.072 kb on - strandat 79.191 kb on + strand, within EX28DRAFT_4107at 79.191 kb on + strand, within EX28DRAFT_4107at 79.268 kb on - strand, within EX28DRAFT_4107at 79.364 kb on + strand, within EX28DRAFT_4107at 79.369 kb on + strand, within EX28DRAFT_4107at 79.718 kb on + strandat 79.761 kb on - strandat 79.787 kb on - strandat 79.787 kb on - strandat 79.886 kb on + strandat 79.891 kb on - strandat 79.891 kb on - strandat 79.953 kb on + strand, within EX28DRAFT_4108at 79.954 kb on - strand, within EX28DRAFT_4108at 79.959 kb on + strand, within EX28DRAFT_4108at 79.960 kb on - strand, within EX28DRAFT_4108at 79.965 kb on + strand, within EX28DRAFT_4108at 79.965 kb on + strand, within EX28DRAFT_4108at 79.965 kb on + strand, within EX28DRAFT_4108at 80.033 kb on + strand, within EX28DRAFT_4108at 80.034 kb on - strand, within EX28DRAFT_4108at 80.034 kb on - strand, within EX28DRAFT_4108at 80.034 kb on - strand, within EX28DRAFT_4108at 80.074 kb on + strand, within EX28DRAFT_4108at 80.075 kb on - strand, within EX28DRAFT_4108at 80.084 kb on + strand, within EX28DRAFT_4108at 80.146 kb on + strand, within EX28DRAFT_4108at 80.147 kb on - strand, within EX28DRAFT_4108at 80.200 kb on - strand, within EX28DRAFT_4108at 80.200 kb on - strand, within EX28DRAFT_4108at 80.263 kb on + strand, within EX28DRAFT_4108at 80.264 kb on - strand, within EX28DRAFT_4108at 80.264 kb on - strand, within EX28DRAFT_4108at 80.341 kb on + strand, within EX28DRAFT_4108at 80.341 kb on + strand, within EX28DRAFT_4108at 80.342 kb on - strand, within EX28DRAFT_4108at 80.370 kb on - strand, within EX28DRAFT_4108at 80.370 kb on - strand, within EX28DRAFT_4108at 80.370 kb on - strand, within EX28DRAFT_4108at 80.443 kb on + strand, within EX28DRAFT_4108

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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78,079 + EX28DRAFT_4106 0.13 -1.9
78,079 + EX28DRAFT_4106 0.13 +0.7
78,079 + EX28DRAFT_4106 0.13 +0.5
78,080 - EX28DRAFT_4106 0.13 +0.4
78,090 + EX28DRAFT_4106 0.14 +1.1
78,485 + EX28DRAFT_4106 0.51 -1.5
78,486 - EX28DRAFT_4106 0.51 +1.4
78,487 + EX28DRAFT_4106 0.51 +1.1
78,487 + EX28DRAFT_4106 0.51 +0.1
78,487 + EX28DRAFT_4106 0.51 -0.1
78,488 - EX28DRAFT_4106 0.52 +0.0
78,488 - EX28DRAFT_4106 0.52 +0.7
78,488 - EX28DRAFT_4106 0.52 +0.0
78,488 - EX28DRAFT_4106 0.52 -0.3
78,488 - EX28DRAFT_4106 0.52 +0.9
78,488 - EX28DRAFT_4106 0.52 +0.1
78,488 - EX28DRAFT_4106 0.52 -2.0
78,488 - EX28DRAFT_4106 0.52 +0.2
78,490 - EX28DRAFT_4106 0.52 +0.3
78,490 - EX28DRAFT_4106 0.52 -0.2
78,522 + EX28DRAFT_4106 0.55 +0.3
78,523 - EX28DRAFT_4106 0.55 +0.8
78,526 - EX28DRAFT_4106 0.55 +0.8
78,660 - EX28DRAFT_4106 0.68 -0.2
78,694 + EX28DRAFT_4106 0.71 +1.0
78,804 - EX28DRAFT_4106 0.81 -0.1
79,012 - +0.5
79,071 + -1.6
79,072 - -0.2
79,191 + EX28DRAFT_4107 0.30 +0.4
79,191 + EX28DRAFT_4107 0.30 +0.8
79,268 - EX28DRAFT_4107 0.50 +0.3
79,364 + EX28DRAFT_4107 0.75 +1.5
79,369 + EX28DRAFT_4107 0.76 +1.1
79,718 + -0.1
79,761 - -0.7
79,787 - -0.1
79,787 - +0.3
79,886 + +0.7
79,891 - -1.2
79,891 - -1.6
79,953 + EX28DRAFT_4108 0.15 -0.4
79,954 - EX28DRAFT_4108 0.15 +0.8
79,959 + EX28DRAFT_4108 0.15 -0.3
79,960 - EX28DRAFT_4108 0.15 +0.1
79,965 + EX28DRAFT_4108 0.16 -1.1
79,965 + EX28DRAFT_4108 0.16 -0.0
79,965 + EX28DRAFT_4108 0.16 +0.5
80,033 + EX28DRAFT_4108 0.22 +1.5
80,034 - EX28DRAFT_4108 0.22 +0.5
80,034 - EX28DRAFT_4108 0.22 -0.1
80,034 - EX28DRAFT_4108 0.22 +0.9
80,074 + EX28DRAFT_4108 0.26 +0.0
80,075 - EX28DRAFT_4108 0.26 -0.1
80,084 + EX28DRAFT_4108 0.27 +0.2
80,146 + EX28DRAFT_4108 0.33 -0.7
80,147 - EX28DRAFT_4108 0.33 -0.3
80,200 - EX28DRAFT_4108 0.38 -0.7
80,200 - EX28DRAFT_4108 0.38 -0.1
80,263 + EX28DRAFT_4108 0.44 +0.4
80,264 - EX28DRAFT_4108 0.44 +0.7
80,264 - EX28DRAFT_4108 0.44 +0.4
80,341 + EX28DRAFT_4108 0.52 -0.0
80,341 + EX28DRAFT_4108 0.52 +0.7
80,342 - EX28DRAFT_4108 0.52 -0.1
80,370 - EX28DRAFT_4108 0.54 -0.6
80,370 - EX28DRAFT_4108 0.54 +0.1
80,370 - EX28DRAFT_4108 0.54 -1.0
80,443 + EX28DRAFT_4108 0.61 -0.5

Or see this region's nucleotide sequence