Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4093 and EX28DRAFT_4094 are separated by 1 nucleotides EX28DRAFT_4094 and EX28DRAFT_4095 overlap by 4 nucleotides EX28DRAFT_4095 and EX28DRAFT_4096 overlap by 32 nucleotides EX28DRAFT_4096 and EX28DRAFT_4097 overlap by 4 nucleotides EX28DRAFT_4097 and EX28DRAFT_4098 are separated by 3 nucleotides
EX28DRAFT_4093: EX28DRAFT_4093 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 66,799 to 67,968
_4093
EX28DRAFT_4094: EX28DRAFT_4094 - Protein of unknown function (DUF3261), at 67,970 to 68,548
_4094
EX28DRAFT_4095: EX28DRAFT_4095 - Predicted exporter, at 68,545 to 70,869
_4095
EX28DRAFT_4096: EX28DRAFT_4096 - Outer membrane lipoprotein-sorting protein, at 70,838 to 71,443
_4096
EX28DRAFT_4097: EX28DRAFT_4097 - Predicted thioesterase, at 71,440 to 71,862
_4097
EX28DRAFT_4098: EX28DRAFT_4098 - Predicted acyltransferase, at 71,866 to 73,557
_4098
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 67.871 kb on + strand at 67.871 kb on + strand at 67.872 kb on - strand at 67.872 kb on - strand at 67.872 kb on - strand at 67.959 kb on + strand at 67.960 kb on - strand at 67.960 kb on - strand at 67.961 kb on + strand at 67.961 kb on + strand at 67.961 kb on + strand at 67.962 kb on - strand at 67.962 kb on - strand at 67.983 kb on + strand at 67.984 kb on - strand at 67.984 kb on - strand at 68.001 kb on + strand at 68.001 kb on + strand at 68.002 kb on - strand at 68.243 kb on - strand, within EX28DRAFT_4094 at 68.262 kb on + strand, within EX28DRAFT_4094 at 68.550 kb on + strand at 68.762 kb on + strand at 68.763 kb on - strand at 68.766 kb on + strand at 68.954 kb on - strand, within EX28DRAFT_4095 at 69.057 kb on - strand, within EX28DRAFT_4095 at 69.267 kb on + strand, within EX28DRAFT_4095 at 69.268 kb on - strand, within EX28DRAFT_4095 at 69.268 kb on - strand, within EX28DRAFT_4095 at 69.815 kb on - strand, within EX28DRAFT_4095 at 69.875 kb on + strand, within EX28DRAFT_4095 at 69.876 kb on - strand, within EX28DRAFT_4095 at 69.876 kb on - strand, within EX28DRAFT_4095 at 69.876 kb on - strand, within EX28DRAFT_4095 at 69.878 kb on + strand, within EX28DRAFT_4095 at 69.878 kb on + strand, within EX28DRAFT_4095 at 69.887 kb on + strand, within EX28DRAFT_4095 at 70.197 kb on + strand, within EX28DRAFT_4095 at 70.268 kb on + strand, within EX28DRAFT_4095 at 70.269 kb on - strand, within EX28DRAFT_4095 at 70.422 kb on - strand, within EX28DRAFT_4095 at 70.805 kb on - strand at 70.959 kb on + strand, within EX28DRAFT_4096 at 70.960 kb on - strand, within EX28DRAFT_4096 at 71.056 kb on + strand, within EX28DRAFT_4096 at 71.147 kb on - strand, within EX28DRAFT_4096 at 71.471 kb on - strand at 71.513 kb on - strand, within EX28DRAFT_4097 at 71.628 kb on + strand, within EX28DRAFT_4097 at 71.629 kb on - strand, within EX28DRAFT_4097 at 71.629 kb on - strand, within EX28DRAFT_4097 at 71.762 kb on + strand, within EX28DRAFT_4097 at 71.771 kb on + strand, within EX28DRAFT_4097 at 71.771 kb on + strand, within EX28DRAFT_4097 at 71.771 kb on + strand, within EX28DRAFT_4097 at 71.772 kb on - strand, within EX28DRAFT_4097 at 71.799 kb on + strand, within EX28DRAFT_4097 at 71.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 67,871 + -0.2 67,871 + -0.2 67,872 - +0.5 67,872 - +0.3 67,872 - +0.4 67,959 + +0.8 67,960 - -0.2 67,960 - -0.5 67,961 + +1.7 67,961 + -0.6 67,961 + +0.4 67,962 - +0.1 67,962 - +0.3 67,983 + -0.5 67,984 - -0.9 67,984 - +0.2 68,001 + +0.1 68,001 + -1.3 68,002 - -3.0 68,243 - EX28DRAFT_4094 0.47 +0.5 68,262 + EX28DRAFT_4094 0.50 +0.3 68,550 + +0.3 68,762 + -0.6 68,763 - +0.4 68,766 + -1.0 68,954 - EX28DRAFT_4095 0.18 +0.3 69,057 - EX28DRAFT_4095 0.22 +0.1 69,267 + EX28DRAFT_4095 0.31 +0.1 69,268 - EX28DRAFT_4095 0.31 +1.0 69,268 - EX28DRAFT_4095 0.31 -0.1 69,815 - EX28DRAFT_4095 0.55 +0.5 69,875 + EX28DRAFT_4095 0.57 +0.5 69,876 - EX28DRAFT_4095 0.57 -0.2 69,876 - EX28DRAFT_4095 0.57 -3.6 69,876 - EX28DRAFT_4095 0.57 -0.6 69,878 + EX28DRAFT_4095 0.57 +0.4 69,878 + EX28DRAFT_4095 0.57 +0.2 69,887 + EX28DRAFT_4095 0.58 +0.5 70,197 + EX28DRAFT_4095 0.71 -0.0 70,268 + EX28DRAFT_4095 0.74 +0.1 70,269 - EX28DRAFT_4095 0.74 -0.3 70,422 - EX28DRAFT_4095 0.81 +0.4 70,805 - +4.4 70,959 + EX28DRAFT_4096 0.20 +1.4 70,960 - EX28DRAFT_4096 0.20 -1.6 71,056 + EX28DRAFT_4096 0.36 -0.1 71,147 - EX28DRAFT_4096 0.51 -1.5 71,471 - +0.1 71,513 - EX28DRAFT_4097 0.17 +0.4 71,628 + EX28DRAFT_4097 0.44 +0.0 71,629 - EX28DRAFT_4097 0.45 +0.2 71,629 - EX28DRAFT_4097 0.45 -0.0 71,762 + EX28DRAFT_4097 0.76 +3.4 71,771 + EX28DRAFT_4097 0.78 +0.2 71,771 + EX28DRAFT_4097 0.78 -0.6 71,771 + EX28DRAFT_4097 0.78 -0.1 71,772 - EX28DRAFT_4097 0.78 +0.2 71,799 + EX28DRAFT_4097 0.85 +0.3 71,868 - -0.1
Or see this region's nucleotide sequence