Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4091

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4090 and EX28DRAFT_4091 overlap by 4 nucleotidesEX28DRAFT_4091 and EX28DRAFT_4092 overlap by 4 nucleotidesEX28DRAFT_4092 and EX28DRAFT_4093 overlap by 4 nucleotides EX28DRAFT_4090: EX28DRAFT_4090 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 64,375 to 65,604 _4090 EX28DRAFT_4091: EX28DRAFT_4091 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 65,601 to 66,332 _4091 EX28DRAFT_4092: EX28DRAFT_4092 - Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase, at 66,329 to 66,802 _4092 EX28DRAFT_4093: EX28DRAFT_4093 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 66,799 to 67,968 _4093 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.607 kb on + strand, within EX28DRAFT_4090at 64.608 kb on - strand, within EX28DRAFT_4090at 64.643 kb on + strand, within EX28DRAFT_4090at 64.644 kb on - strand, within EX28DRAFT_4090at 64.710 kb on + strand, within EX28DRAFT_4090at 64.712 kb on + strand, within EX28DRAFT_4090at 64.713 kb on - strand, within EX28DRAFT_4090at 64.713 kb on - strand, within EX28DRAFT_4090at 64.713 kb on - strand, within EX28DRAFT_4090at 64.932 kb on + strand, within EX28DRAFT_4090at 64.957 kb on - strand, within EX28DRAFT_4090at 65.109 kb on + strand, within EX28DRAFT_4090at 65.110 kb on - strand, within EX28DRAFT_4090at 65.143 kb on + strand, within EX28DRAFT_4090at 65.198 kb on + strand, within EX28DRAFT_4090at 65.198 kb on + strand, within EX28DRAFT_4090at 65.198 kb on + strand, within EX28DRAFT_4090at 65.199 kb on - strand, within EX28DRAFT_4090at 65.199 kb on - strand, within EX28DRAFT_4090at 65.199 kb on - strand, within EX28DRAFT_4090at 65.217 kb on + strand, within EX28DRAFT_4090at 65.403 kb on + strand, within EX28DRAFT_4090at 65.404 kb on - strand, within EX28DRAFT_4090at 65.404 kb on - strand, within EX28DRAFT_4090at 65.415 kb on + strand, within EX28DRAFT_4090at 65.417 kb on + strand, within EX28DRAFT_4090at 65.417 kb on + strand, within EX28DRAFT_4090at 65.418 kb on - strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.516 kb on + strandat 65.517 kb on - strandat 65.604 kb on + strandat 65.604 kb on + strandat 65.604 kb on + strandat 65.605 kb on - strandat 65.668 kb on + strandat 65.705 kb on + strand, within EX28DRAFT_4091at 65.943 kb on - strand, within EX28DRAFT_4091at 65.963 kb on + strand, within EX28DRAFT_4091at 65.964 kb on - strand, within EX28DRAFT_4091at 65.964 kb on - strand, within EX28DRAFT_4091at 65.984 kb on + strand, within EX28DRAFT_4091at 65.986 kb on + strand, within EX28DRAFT_4091at 66.081 kb on + strand, within EX28DRAFT_4091at 66.089 kb on - strand, within EX28DRAFT_4091at 66.389 kb on - strand, within EX28DRAFT_4092at 66.562 kb on + strand, within EX28DRAFT_4092at 66.778 kb on - strandat 66.778 kb on - strandat 66.791 kb on + strandat 66.791 kb on + strandat 66.791 kb on + strandat 66.792 kb on - strandat 66.792 kb on - strandat 66.795 kb on + strandat 66.795 kb on + strandat 66.795 kb on + strandat 66.796 kb on - strandat 66.796 kb on - strandat 66.796 kb on - strandat 66.796 kb on - strandat 66.856 kb on - strandat 67.006 kb on - strand, within EX28DRAFT_4093at 67.085 kb on - strand, within EX28DRAFT_4093at 67.139 kb on + strand, within EX28DRAFT_4093at 67.231 kb on - strand, within EX28DRAFT_4093at 67.235 kb on + strand, within EX28DRAFT_4093at 67.236 kb on - strand, within EX28DRAFT_4093at 67.270 kb on + strand, within EX28DRAFT_4093at 67.271 kb on - strand, within EX28DRAFT_4093at 67.271 kb on - strand, within EX28DRAFT_4093at 67.292 kb on - strand, within EX28DRAFT_4093at 67.292 kb on - strand, within EX28DRAFT_4093

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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64,607 + EX28DRAFT_4090 0.19 +0.5
64,608 - EX28DRAFT_4090 0.19 +0.0
64,643 + EX28DRAFT_4090 0.22 +0.5
64,644 - EX28DRAFT_4090 0.22 -0.1
64,710 + EX28DRAFT_4090 0.27 +0.1
64,712 + EX28DRAFT_4090 0.27 +0.4
64,713 - EX28DRAFT_4090 0.27 -2.0
64,713 - EX28DRAFT_4090 0.27 -1.2
64,713 - EX28DRAFT_4090 0.27 -0.2
64,932 + EX28DRAFT_4090 0.45 +0.2
64,957 - EX28DRAFT_4090 0.47 +0.2
65,109 + EX28DRAFT_4090 0.60 +1.1
65,110 - EX28DRAFT_4090 0.60 +0.0
65,143 + EX28DRAFT_4090 0.62 -0.0
65,198 + EX28DRAFT_4090 0.67 +0.5
65,198 + EX28DRAFT_4090 0.67 +0.4
65,198 + EX28DRAFT_4090 0.67 +0.9
65,199 - EX28DRAFT_4090 0.67 +0.9
65,199 - EX28DRAFT_4090 0.67 -0.4
65,199 - EX28DRAFT_4090 0.67 -2.1
65,217 + EX28DRAFT_4090 0.68 -1.2
65,403 + EX28DRAFT_4090 0.84 +0.6
65,404 - EX28DRAFT_4090 0.84 +0.1
65,404 - EX28DRAFT_4090 0.84 +0.4
65,415 + EX28DRAFT_4090 0.85 -0.8
65,417 + EX28DRAFT_4090 0.85 +0.7
65,417 + EX28DRAFT_4090 0.85 +0.3
65,418 - EX28DRAFT_4090 0.85 -0.7
65,477 + EX28DRAFT_4090 0.90 -0.5
65,477 + EX28DRAFT_4090 0.90 -0.2
65,477 + EX28DRAFT_4090 0.90 -0.5
65,477 + EX28DRAFT_4090 0.90 -0.4
65,477 + EX28DRAFT_4090 0.90 -0.2
65,478 - EX28DRAFT_4090 0.90 -0.2
65,478 - EX28DRAFT_4090 0.90 -0.8
65,478 - EX28DRAFT_4090 0.90 -0.5
65,478 - EX28DRAFT_4090 0.90 +0.0
65,478 - EX28DRAFT_4090 0.90 +0.6
65,478 - EX28DRAFT_4090 0.90 +0.0
65,516 + -0.3
65,517 - +1.1
65,604 + -1.6
65,604 + -0.2
65,604 + +0.8
65,605 - +0.1
65,668 + +1.0
65,705 + EX28DRAFT_4091 0.14 -1.1
65,943 - EX28DRAFT_4091 0.47 -0.3
65,963 + EX28DRAFT_4091 0.49 -0.4
65,964 - EX28DRAFT_4091 0.50 +0.5
65,964 - EX28DRAFT_4091 0.50 -1.7
65,984 + EX28DRAFT_4091 0.52 +0.2
65,986 + EX28DRAFT_4091 0.53 -0.6
66,081 + EX28DRAFT_4091 0.66 +0.1
66,089 - EX28DRAFT_4091 0.67 +0.2
66,389 - EX28DRAFT_4092 0.13 +0.3
66,562 + EX28DRAFT_4092 0.49 -0.1
66,778 - +2.4
66,778 - +1.0
66,791 + -0.8
66,791 + +0.7
66,791 + -0.6
66,792 - -0.8
66,792 - +0.5
66,795 + -0.1
66,795 + -0.3
66,795 + +0.0
66,796 - +0.9
66,796 - -0.3
66,796 - -1.2
66,796 - +1.2
66,856 - +0.8
67,006 - EX28DRAFT_4093 0.18 +1.0
67,085 - EX28DRAFT_4093 0.24 +0.2
67,139 + EX28DRAFT_4093 0.29 +0.4
67,231 - EX28DRAFT_4093 0.37 +2.4
67,235 + EX28DRAFT_4093 0.37 +1.2
67,236 - EX28DRAFT_4093 0.37 +0.5
67,270 + EX28DRAFT_4093 0.40 +0.2
67,271 - EX28DRAFT_4093 0.40 +1.9
67,271 - EX28DRAFT_4093 0.40 +1.0
67,292 - EX28DRAFT_4093 0.42 +1.2
67,292 - EX28DRAFT_4093 0.42 +0.8

Or see this region's nucleotide sequence