Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3656 and EX28DRAFT_3657 are separated by 128 nucleotides EX28DRAFT_3657 and EX28DRAFT_3658 are separated by 44 nucleotides EX28DRAFT_3658 and EX28DRAFT_3659 overlap by 17 nucleotides
EX28DRAFT_3656: EX28DRAFT_3656 - AraC-type DNA-binding domain-containing proteins, at 323,583 to 324,428
_3656
EX28DRAFT_3657: EX28DRAFT_3657 - Uncharacterized membrane-associated protein, at 324,557 to 325,324
_3657
EX28DRAFT_3658: EX28DRAFT_3658 - thiamine ABC transporter, ATP-binding protein, at 325,369 to 326,070
_3658
EX28DRAFT_3659: EX28DRAFT_3659 - thiamine ABC transporter, permease protein, at 326,054 to 327,664
_3659
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 323.716 kb on - strand, within EX28DRAFT_3656 at 323.826 kb on + strand, within EX28DRAFT_3656 at 324.041 kb on + strand, within EX28DRAFT_3656 at 324.135 kb on + strand, within EX28DRAFT_3656 at 324.135 kb on + strand, within EX28DRAFT_3656 at 324.136 kb on - strand, within EX28DRAFT_3656 at 324.136 kb on - strand, within EX28DRAFT_3656 at 324.250 kb on + strand, within EX28DRAFT_3656 at 324.360 kb on + strand at 324.360 kb on + strand at 324.360 kb on + strand at 324.481 kb on - strand at 324.556 kb on + strand at 324.556 kb on + strand at 324.557 kb on - strand at 324.580 kb on + strand at 324.580 kb on + strand at 324.580 kb on + strand at 324.581 kb on - strand at 324.595 kb on + strand at 324.599 kb on + strand at 324.600 kb on - strand at 324.600 kb on - strand at 324.799 kb on + strand, within EX28DRAFT_3657 at 324.800 kb on - strand, within EX28DRAFT_3657 at 325.019 kb on + strand, within EX28DRAFT_3657 at 325.019 kb on + strand, within EX28DRAFT_3657 at 325.020 kb on - strand, within EX28DRAFT_3657 at 325.088 kb on - strand, within EX28DRAFT_3657 at 325.190 kb on + strand, within EX28DRAFT_3657 at 325.191 kb on - strand, within EX28DRAFT_3657 at 325.503 kb on + strand, within EX28DRAFT_3658 at 325.864 kb on - strand, within EX28DRAFT_3658 at 325.944 kb on + strand, within EX28DRAFT_3658 at 325.945 kb on - strand, within EX28DRAFT_3658 at 325.945 kb on - strand, within EX28DRAFT_3658 at 326.098 kb on + strand at 326.102 kb on + strand at 326.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 323,716 - EX28DRAFT_3656 0.16 +0.2 323,826 + EX28DRAFT_3656 0.29 -1.0 324,041 + EX28DRAFT_3656 0.54 -1.4 324,135 + EX28DRAFT_3656 0.65 -1.0 324,135 + EX28DRAFT_3656 0.65 +0.1 324,136 - EX28DRAFT_3656 0.65 -1.1 324,136 - EX28DRAFT_3656 0.65 +0.4 324,250 + EX28DRAFT_3656 0.79 +0.5 324,360 + +0.3 324,360 + +0.3 324,360 + -0.7 324,481 - -1.5 324,556 + +0.6 324,556 + -1.9 324,557 - -1.6 324,580 + -0.1 324,580 + +2.6 324,580 + -1.4 324,581 - -0.5 324,595 + -0.3 324,599 + +0.8 324,600 - -1.1 324,600 - -0.6 324,799 + EX28DRAFT_3657 0.32 +1.8 324,800 - EX28DRAFT_3657 0.32 -0.2 325,019 + EX28DRAFT_3657 0.60 +1.7 325,019 + EX28DRAFT_3657 0.60 -0.1 325,020 - EX28DRAFT_3657 0.60 +1.2 325,088 - EX28DRAFT_3657 0.69 +0.2 325,190 + EX28DRAFT_3657 0.82 +0.5 325,191 - EX28DRAFT_3657 0.83 +0.6 325,503 + EX28DRAFT_3658 0.19 -1.0 325,864 - EX28DRAFT_3658 0.71 -1.0 325,944 + EX28DRAFT_3658 0.82 +0.1 325,945 - EX28DRAFT_3658 0.82 +1.0 325,945 - EX28DRAFT_3658 0.82 -0.1 326,098 + -0.6 326,102 + +0.0 326,187 + +0.0
Or see this region's nucleotide sequence