Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotides EX28DRAFT_3503 and EX28DRAFT_3504 overlap by 4 nucleotides EX28DRAFT_3504 and EX28DRAFT_3505 are separated by 23 nucleotides EX28DRAFT_3505 and EX28DRAFT_3506 are separated by 9 nucleotides EX28DRAFT_3506 and EX28DRAFT_3507 are separated by 21 nucleotides EX28DRAFT_3507 and EX28DRAFT_3508 are separated by 185 nucleotides
EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765
_3502
EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048
_3503
EX28DRAFT_3504: EX28DRAFT_3504 - XapX domain, at 167,045 to 167,305
_3504
EX28DRAFT_3505: EX28DRAFT_3505 - Response regulator receiver domain, at 167,329 to 167,709
_3505
EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301
_3506
EX28DRAFT_3507: EX28DRAFT_3507 - Response regulator, at 173,323 to 173,922
_3507
EX28DRAFT_3508: EX28DRAFT_3508 - Lactoylglutathione lyase and related lyases, at 174,108 to 174,494
_3508
Position (kb) 167
168
169
170
171
172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 167.059 kb on - strand at 167.091 kb on + strand, within EX28DRAFT_3504 at 167.097 kb on - strand, within EX28DRAFT_3504 at 167.200 kb on - strand, within EX28DRAFT_3504 at 167.219 kb on - strand, within EX28DRAFT_3504 at 167.425 kb on - strand, within EX28DRAFT_3505 at 167.444 kb on + strand, within EX28DRAFT_3505 at 167.528 kb on + strand, within EX28DRAFT_3505 at 167.529 kb on - strand, within EX28DRAFT_3505 at 167.578 kb on - strand, within EX28DRAFT_3505 at 167.619 kb on + strand, within EX28DRAFT_3505 at 167.679 kb on + strand at 167.680 kb on - strand at 167.798 kb on - strand at 168.026 kb on - strand at 168.177 kb on + strand at 168.178 kb on - strand at 168.289 kb on + strand, within EX28DRAFT_3506 at 168.289 kb on + strand, within EX28DRAFT_3506 at 168.289 kb on + strand, within EX28DRAFT_3506 at 168.290 kb on - strand, within EX28DRAFT_3506 at 168.290 kb on - strand, within EX28DRAFT_3506 at 168.290 kb on - strand, within EX28DRAFT_3506 at 168.291 kb on + strand, within EX28DRAFT_3506 at 168.291 kb on + strand, within EX28DRAFT_3506 at 168.292 kb on - strand, within EX28DRAFT_3506 at 168.292 kb on - strand, within EX28DRAFT_3506 at 168.292 kb on - strand, within EX28DRAFT_3506 at 168.350 kb on - strand, within EX28DRAFT_3506 at 168.885 kb on - strand, within EX28DRAFT_3506 at 168.887 kb on + strand, within EX28DRAFT_3506 at 168.888 kb on - strand, within EX28DRAFT_3506 at 169.095 kb on + strand, within EX28DRAFT_3506 at 169.096 kb on - strand, within EX28DRAFT_3506 at 169.192 kb on - strand, within EX28DRAFT_3506 at 169.202 kb on - strand, within EX28DRAFT_3506 at 169.202 kb on - strand, within EX28DRAFT_3506 at 169.202 kb on - strand, within EX28DRAFT_3506 at 169.385 kb on + strand, within EX28DRAFT_3506 at 169.516 kb on + strand, within EX28DRAFT_3506 at 169.516 kb on + strand, within EX28DRAFT_3506 at 169.517 kb on - strand, within EX28DRAFT_3506 at 169.517 kb on - strand, within EX28DRAFT_3506 at 169.534 kb on + strand, within EX28DRAFT_3506 at 169.564 kb on + strand, within EX28DRAFT_3506 at 169.718 kb on - strand, within EX28DRAFT_3506 at 169.840 kb on - strand, within EX28DRAFT_3506 at 170.042 kb on - strand, within EX28DRAFT_3506 at 170.091 kb on + strand, within EX28DRAFT_3506 at 170.230 kb on + strand, within EX28DRAFT_3506 at 170.230 kb on + strand, within EX28DRAFT_3506 at 170.231 kb on - strand, within EX28DRAFT_3506 at 170.231 kb on - strand, within EX28DRAFT_3506 at 170.444 kb on - strand, within EX28DRAFT_3506 at 170.728 kb on - strand, within EX28DRAFT_3506 at 170.817 kb on + strand, within EX28DRAFT_3506 at 170.889 kb on + strand, within EX28DRAFT_3506 at 170.939 kb on - strand, within EX28DRAFT_3506 at 171.091 kb on - strand, within EX28DRAFT_3506 at 171.191 kb on - strand, within EX28DRAFT_3506 at 171.268 kb on + strand, within EX28DRAFT_3506 at 171.318 kb on + strand, within EX28DRAFT_3506 at 171.386 kb on - strand, within EX28DRAFT_3506 at 171.696 kb on + strand, within EX28DRAFT_3506 at 171.710 kb on + strand, within EX28DRAFT_3506 at 172.040 kb on - strand, within EX28DRAFT_3506 at 172.144 kb on + strand, within EX28DRAFT_3506 at 172.298 kb on - strand, within EX28DRAFT_3506 at 172.474 kb on + strand, within EX28DRAFT_3506 at 172.552 kb on - strand, within EX28DRAFT_3506 at 172.858 kb on + strand at 172.859 kb on - strand at 172.872 kb on + strand at 172.951 kb on - strand at 172.951 kb on - strand at 173.153 kb on - strand at 173.325 kb on - strand at 173.539 kb on - strand, within EX28DRAFT_3507 at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.991 kb on + strand at 174.033 kb on + strand at 174.033 kb on + strand at 174.039 kb on + strand at 174.039 kb on + strand at 174.064 kb on - strand at 174.064 kb on - strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 166,878 + EX28DRAFT_3503 0.23 -2.2 166,878 + EX28DRAFT_3503 0.23 -0.0 166,878 + EX28DRAFT_3503 0.23 +0.1 166,878 + EX28DRAFT_3503 0.23 -0.8 166,879 - EX28DRAFT_3503 0.23 +1.5 166,879 - EX28DRAFT_3503 0.23 +0.6 167,059 - -0.7 167,091 + EX28DRAFT_3504 0.18 +0.4 167,097 - EX28DRAFT_3504 0.20 -0.9 167,200 - EX28DRAFT_3504 0.59 +0.5 167,219 - EX28DRAFT_3504 0.67 +0.5 167,425 - EX28DRAFT_3505 0.25 -0.1 167,444 + EX28DRAFT_3505 0.30 -0.7 167,528 + EX28DRAFT_3505 0.52 -0.2 167,529 - EX28DRAFT_3505 0.52 -0.2 167,578 - EX28DRAFT_3505 0.65 -0.0 167,619 + EX28DRAFT_3505 0.76 +0.1 167,679 + -0.9 167,680 - -0.1 167,798 - -0.1 168,026 - -0.0 168,177 + +0.2 168,178 - -0.4 168,289 + EX28DRAFT_3506 0.10 -0.8 168,289 + EX28DRAFT_3506 0.10 +0.3 168,289 + EX28DRAFT_3506 0.10 +0.0 168,290 - EX28DRAFT_3506 0.10 -0.3 168,290 - EX28DRAFT_3506 0.10 +0.1 168,290 - EX28DRAFT_3506 0.10 -1.1 168,291 + EX28DRAFT_3506 0.10 +0.6 168,291 + EX28DRAFT_3506 0.10 -1.9 168,292 - EX28DRAFT_3506 0.10 -1.0 168,292 - EX28DRAFT_3506 0.10 -0.3 168,292 - EX28DRAFT_3506 0.10 +0.5 168,350 - EX28DRAFT_3506 0.11 -0.0 168,885 - EX28DRAFT_3506 0.21 +1.3 168,887 + EX28DRAFT_3506 0.21 +1.0 168,888 - EX28DRAFT_3506 0.21 -1.6 169,095 + EX28DRAFT_3506 0.25 -0.2 169,096 - EX28DRAFT_3506 0.25 +0.1 169,192 - EX28DRAFT_3506 0.26 +0.5 169,202 - EX28DRAFT_3506 0.27 -0.9 169,202 - EX28DRAFT_3506 0.27 -0.3 169,202 - EX28DRAFT_3506 0.27 +0.1 169,385 + EX28DRAFT_3506 0.30 -0.3 169,516 + EX28DRAFT_3506 0.32 -2.2 169,516 + EX28DRAFT_3506 0.32 +0.8 169,517 - EX28DRAFT_3506 0.32 -0.9 169,517 - EX28DRAFT_3506 0.32 +0.7 169,534 + EX28DRAFT_3506 0.33 -1.1 169,564 + EX28DRAFT_3506 0.33 -0.9 169,718 - EX28DRAFT_3506 0.36 +0.5 169,840 - EX28DRAFT_3506 0.38 -0.5 170,042 - EX28DRAFT_3506 0.42 +1.6 170,091 + EX28DRAFT_3506 0.42 +0.7 170,230 + EX28DRAFT_3506 0.45 -0.4 170,230 + EX28DRAFT_3506 0.45 -0.3 170,231 - EX28DRAFT_3506 0.45 -0.2 170,231 - EX28DRAFT_3506 0.45 -0.4 170,444 - EX28DRAFT_3506 0.49 -0.8 170,728 - EX28DRAFT_3506 0.54 -0.5 170,817 + EX28DRAFT_3506 0.55 +0.4 170,889 + EX28DRAFT_3506 0.57 +0.0 170,939 - EX28DRAFT_3506 0.58 -0.1 171,091 - EX28DRAFT_3506 0.60 -0.3 171,191 - EX28DRAFT_3506 0.62 +1.7 171,268 + EX28DRAFT_3506 0.64 +0.2 171,318 + EX28DRAFT_3506 0.64 -0.5 171,386 - EX28DRAFT_3506 0.66 -0.7 171,696 + EX28DRAFT_3506 0.71 -1.6 171,710 + EX28DRAFT_3506 0.71 +0.1 172,040 - EX28DRAFT_3506 0.77 +0.7 172,144 + EX28DRAFT_3506 0.79 +0.1 172,298 - EX28DRAFT_3506 0.82 -0.1 172,474 + EX28DRAFT_3506 0.85 -0.6 172,552 - EX28DRAFT_3506 0.87 +0.4 172,858 + +2.5 172,859 - -0.5 172,872 + -0.2 172,951 - -0.3 172,951 - +0.3 173,153 - +0.2 173,325 - -0.4 173,539 - EX28DRAFT_3507 0.36 -0.9 173,906 + -0.5 173,906 + +0.4 173,906 + -1.0 173,906 + -0.1 173,906 + +0.4 173,991 + -0.5 174,033 + -1.3 174,033 + +0.9 174,039 + +0.5 174,039 + +3.6 174,064 - -0.7 174,064 - -0.7 174,071 + -0.8 174,071 + +0.5 174,071 + -2.3 174,109 + -0.6
Or see this region's nucleotide sequence