Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3501 and EX28DRAFT_3502 are separated by 218 nucleotides EX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotides EX28DRAFT_3503 and EX28DRAFT_3504 overlap by 4 nucleotides EX28DRAFT_3504 and EX28DRAFT_3505 are separated by 23 nucleotides EX28DRAFT_3505 and EX28DRAFT_3506 are separated by 9 nucleotides
EX28DRAFT_3501: EX28DRAFT_3501 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 163,989 to 165,860
_3501
EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765
_3502
EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048
_3503
EX28DRAFT_3504: EX28DRAFT_3504 - XapX domain, at 167,045 to 167,305
_3504
EX28DRAFT_3505: EX28DRAFT_3505 - Response regulator receiver domain, at 167,329 to 167,709
_3505
EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301
_3506
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.861 kb on - strand at 165.926 kb on + strand at 165.928 kb on + strand at 165.928 kb on + strand at 165.929 kb on - strand at 165.929 kb on - strand at 165.929 kb on - strand at 165.933 kb on + strand at 165.933 kb on + strand at 165.943 kb on - strand at 165.943 kb on - strand at 165.944 kb on + strand at 165.952 kb on + strand at 165.953 kb on - strand at 165.953 kb on - strand at 165.954 kb on + strand at 165.955 kb on - strand at 165.955 kb on - strand at 165.958 kb on + strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.960 kb on + strand at 165.961 kb on - strand at 165.961 kb on - strand at 165.965 kb on - strand at 165.974 kb on + strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.986 kb on + strand at 165.987 kb on - strand at 165.990 kb on + strand at 166.078 kb on + strand at 166.079 kb on - strand at 166.171 kb on + strand, within EX28DRAFT_3502 at 166.172 kb on - strand, within EX28DRAFT_3502 at 166.286 kb on + strand, within EX28DRAFT_3502 at 166.333 kb on + strand, within EX28DRAFT_3502 at 166.334 kb on - strand, within EX28DRAFT_3502 at 166.472 kb on + strand, within EX28DRAFT_3502 at 166.482 kb on - strand, within EX28DRAFT_3502 at 166.482 kb on - strand, within EX28DRAFT_3502 at 166.483 kb on + strand, within EX28DRAFT_3502 at 166.484 kb on - strand, within EX28DRAFT_3502 at 166.625 kb on + strand, within EX28DRAFT_3502 at 166.686 kb on - strand, within EX28DRAFT_3502 at 166.686 kb on - strand, within EX28DRAFT_3502 at 166.691 kb on + strand, within EX28DRAFT_3502 at 166.691 kb on + strand, within EX28DRAFT_3502 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 167.059 kb on - strand at 167.091 kb on + strand, within EX28DRAFT_3504 at 167.097 kb on - strand, within EX28DRAFT_3504 at 167.200 kb on - strand, within EX28DRAFT_3504 at 167.219 kb on - strand, within EX28DRAFT_3504 at 167.425 kb on - strand, within EX28DRAFT_3505 at 167.444 kb on + strand, within EX28DRAFT_3505 at 167.528 kb on + strand, within EX28DRAFT_3505 at 167.529 kb on - strand, within EX28DRAFT_3505 at 167.578 kb on - strand, within EX28DRAFT_3505 at 167.619 kb on + strand, within EX28DRAFT_3505 at 167.679 kb on + strand at 167.680 kb on - strand at 167.798 kb on - strand at 168.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 165,861 - -1.1 165,926 + -0.2 165,928 + -0.5 165,928 + -0.0 165,929 - -0.5 165,929 - +0.1 165,929 - +0.0 165,933 + -0.1 165,933 + -1.9 165,943 - -0.0 165,943 - +0.1 165,944 + -0.5 165,952 + -0.3 165,953 - -0.4 165,953 - -0.7 165,954 + +0.7 165,955 - +1.0 165,955 - -0.2 165,958 + +1.9 165,959 - +0.4 165,959 - -0.3 165,959 - -0.2 165,959 - -1.7 165,959 - -0.7 165,960 + -0.1 165,961 - -0.1 165,961 - -1.2 165,965 - -0.5 165,974 + +0.3 165,975 - -0.1 165,975 - +1.0 165,975 - +0.8 165,986 + +0.0 165,987 - +1.2 165,990 + -0.7 166,078 + +0.1 166,079 - +0.4 166,171 + EX28DRAFT_3502 0.13 +1.9 166,172 - EX28DRAFT_3502 0.14 -0.3 166,286 + EX28DRAFT_3502 0.30 -0.3 166,333 + EX28DRAFT_3502 0.37 +0.1 166,334 - EX28DRAFT_3502 0.37 -0.9 166,472 + EX28DRAFT_3502 0.57 +0.3 166,482 - EX28DRAFT_3502 0.59 +0.0 166,482 - EX28DRAFT_3502 0.59 -0.3 166,483 + EX28DRAFT_3502 0.59 +0.4 166,484 - EX28DRAFT_3502 0.59 +0.8 166,625 + EX28DRAFT_3502 0.79 +0.4 166,686 - EX28DRAFT_3502 0.88 -0.4 166,686 - EX28DRAFT_3502 0.88 -1.2 166,691 + EX28DRAFT_3502 0.89 +0.4 166,691 + EX28DRAFT_3502 0.89 -1.1 166,878 + EX28DRAFT_3503 0.23 -2.2 166,878 + EX28DRAFT_3503 0.23 -0.0 166,878 + EX28DRAFT_3503 0.23 +0.1 166,878 + EX28DRAFT_3503 0.23 -0.8 166,879 - EX28DRAFT_3503 0.23 +1.5 166,879 - EX28DRAFT_3503 0.23 +0.6 167,059 - -0.7 167,091 + EX28DRAFT_3504 0.18 +0.4 167,097 - EX28DRAFT_3504 0.20 -0.9 167,200 - EX28DRAFT_3504 0.59 +0.5 167,219 - EX28DRAFT_3504 0.67 +0.5 167,425 - EX28DRAFT_3505 0.25 -0.1 167,444 + EX28DRAFT_3505 0.30 -0.7 167,528 + EX28DRAFT_3505 0.52 -0.2 167,529 - EX28DRAFT_3505 0.52 -0.2 167,578 - EX28DRAFT_3505 0.65 -0.0 167,619 + EX28DRAFT_3505 0.76 +0.1 167,679 + -0.9 167,680 - -0.1 167,798 - -0.1 168,026 - -0.0
Or see this region's nucleotide sequence