Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3481

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3480 and EX28DRAFT_3481 are separated by 684 nucleotidesEX28DRAFT_3481 and EX28DRAFT_3482 overlap by 4 nucleotidesEX28DRAFT_3482 and EX28DRAFT_3483 are separated by 21 nucleotides EX28DRAFT_3480: EX28DRAFT_3480 - hypothetical protein, at 145,288 to 145,623 _3480 EX28DRAFT_3481: EX28DRAFT_3481 - hypothetical protein, at 146,308 to 146,532 _3481 EX28DRAFT_3482: EX28DRAFT_3482 - hypothetical protein, at 146,529 to 146,897 _3482 EX28DRAFT_3483: EX28DRAFT_3483 - Phage major capsid protein E, at 146,919 to 147,950 _3483 Position (kb) 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 145.318 kb on - strandat 145.365 kb on - strand, within EX28DRAFT_3480at 145.382 kb on + strand, within EX28DRAFT_3480at 145.528 kb on - strand, within EX28DRAFT_3480at 145.561 kb on + strand, within EX28DRAFT_3480at 145.561 kb on + strand, within EX28DRAFT_3480at 145.561 kb on + strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.562 kb on - strand, within EX28DRAFT_3480at 145.673 kb on + strandat 145.673 kb on + strandat 145.675 kb on + strandat 145.675 kb on + strandat 145.676 kb on - strandat 145.680 kb on + strandat 145.706 kb on + strandat 145.714 kb on + strandat 145.743 kb on - strandat 145.761 kb on + strandat 145.764 kb on + strandat 145.764 kb on + strandat 145.765 kb on - strandat 145.843 kb on - strandat 145.865 kb on + strandat 145.866 kb on - strandat 145.952 kb on - strandat 145.998 kb on + strandat 146.010 kb on - strandat 146.130 kb on - strandat 146.399 kb on - strand, within EX28DRAFT_3481at 146.554 kb on - strandat 146.642 kb on + strand, within EX28DRAFT_3482at 146.666 kb on + strand, within EX28DRAFT_3482at 146.669 kb on + strand, within EX28DRAFT_3482at 146.669 kb on + strand, within EX28DRAFT_3482at 146.670 kb on - strand, within EX28DRAFT_3482at 146.670 kb on - strand, within EX28DRAFT_3482at 146.670 kb on - strand, within EX28DRAFT_3482at 146.728 kb on - strand, within EX28DRAFT_3482at 146.747 kb on + strand, within EX28DRAFT_3482at 146.747 kb on + strand, within EX28DRAFT_3482at 146.748 kb on - strand, within EX28DRAFT_3482at 146.765 kb on - strand, within EX28DRAFT_3482at 146.845 kb on + strand, within EX28DRAFT_3482at 146.915 kb on + strandat 146.929 kb on + strandat 146.930 kb on - strandat 146.959 kb on + strandat 146.981 kb on + strandat 146.982 kb on - strandat 147.078 kb on + strand, within EX28DRAFT_3483at 147.078 kb on + strand, within EX28DRAFT_3483at 147.079 kb on - strand, within EX28DRAFT_3483at 147.079 kb on - strand, within EX28DRAFT_3483at 147.144 kb on + strand, within EX28DRAFT_3483at 147.145 kb on - strand, within EX28DRAFT_3483at 147.162 kb on + strand, within EX28DRAFT_3483at 147.169 kb on + strand, within EX28DRAFT_3483at 147.212 kb on + strand, within EX28DRAFT_3483at 147.229 kb on + strand, within EX28DRAFT_3483at 147.242 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.250 kb on + strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.251 kb on - strand, within EX28DRAFT_3483at 147.252 kb on + strand, within EX28DRAFT_3483at 147.252 kb on + strand, within EX28DRAFT_3483at 147.253 kb on - strand, within EX28DRAFT_3483at 147.253 kb on - strand, within EX28DRAFT_3483at 147.253 kb on - strand, within EX28DRAFT_3483at 147.294 kb on - strand, within EX28DRAFT_3483at 147.322 kb on + strand, within EX28DRAFT_3483at 147.391 kb on + strand, within EX28DRAFT_3483at 147.392 kb on - strand, within EX28DRAFT_3483at 147.414 kb on - strand, within EX28DRAFT_3483at 147.414 kb on - strand, within EX28DRAFT_3483at 147.426 kb on - strand, within EX28DRAFT_3483at 147.442 kb on + strand, within EX28DRAFT_3483at 147.442 kb on + strand, within EX28DRAFT_3483at 147.443 kb on - strand, within EX28DRAFT_3483at 147.443 kb on - strand, within EX28DRAFT_3483

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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145,318 - -0.4
145,365 - EX28DRAFT_3480 0.23 +0.0
145,382 + EX28DRAFT_3480 0.28 -0.4
145,528 - EX28DRAFT_3480 0.71 +1.2
145,561 + EX28DRAFT_3480 0.81 -2.6
145,561 + EX28DRAFT_3480 0.81 -0.2
145,561 + EX28DRAFT_3480 0.81 +0.4
145,562 - EX28DRAFT_3480 0.82 +0.5
145,562 - EX28DRAFT_3480 0.82 +0.1
145,562 - EX28DRAFT_3480 0.82 -0.4
145,562 - EX28DRAFT_3480 0.82 +0.3
145,562 - EX28DRAFT_3480 0.82 +2.2
145,562 - EX28DRAFT_3480 0.82 +1.8
145,673 + +1.0
145,673 + +0.5
145,675 + +1.2
145,675 + +0.7
145,676 - +0.2
145,680 + +0.8
145,706 + +0.2
145,714 + -0.1
145,743 - -0.1
145,761 + -0.9
145,764 + -0.4
145,764 + +0.6
145,765 - -1.1
145,843 - +0.5
145,865 + -0.0
145,866 - -0.3
145,952 - +0.1
145,998 + -1.1
146,010 - -0.4
146,130 - +0.2
146,399 - EX28DRAFT_3481 0.40 +0.6
146,554 - -0.8
146,642 + EX28DRAFT_3482 0.31 +0.7
146,666 + EX28DRAFT_3482 0.37 +0.0
146,669 + EX28DRAFT_3482 0.38 +0.1
146,669 + EX28DRAFT_3482 0.38 -0.3
146,670 - EX28DRAFT_3482 0.38 -0.2
146,670 - EX28DRAFT_3482 0.38 -0.7
146,670 - EX28DRAFT_3482 0.38 +0.8
146,728 - EX28DRAFT_3482 0.54 +0.1
146,747 + EX28DRAFT_3482 0.59 +0.7
146,747 + EX28DRAFT_3482 0.59 -0.4
146,748 - EX28DRAFT_3482 0.59 -0.2
146,765 - EX28DRAFT_3482 0.64 -2.4
146,845 + EX28DRAFT_3482 0.86 +0.2
146,915 + +1.2
146,929 + -1.9
146,930 - -1.1
146,959 + +0.2
146,981 + +1.1
146,982 - -1.5
147,078 + EX28DRAFT_3483 0.15 +0.5
147,078 + EX28DRAFT_3483 0.15 -0.6
147,079 - EX28DRAFT_3483 0.16 +1.3
147,079 - EX28DRAFT_3483 0.16 -0.9
147,144 + EX28DRAFT_3483 0.22 +1.2
147,145 - EX28DRAFT_3483 0.22 -0.0
147,162 + EX28DRAFT_3483 0.24 -0.4
147,169 + EX28DRAFT_3483 0.24 -0.7
147,212 + EX28DRAFT_3483 0.28 +0.9
147,229 + EX28DRAFT_3483 0.30 +0.3
147,242 + EX28DRAFT_3483 0.31 -0.6
147,250 + EX28DRAFT_3483 0.32 -0.3
147,250 + EX28DRAFT_3483 0.32 -0.1
147,250 + EX28DRAFT_3483 0.32 +0.1
147,250 + EX28DRAFT_3483 0.32 -0.2
147,251 - EX28DRAFT_3483 0.32 +0.5
147,251 - EX28DRAFT_3483 0.32 +0.4
147,251 - EX28DRAFT_3483 0.32 +0.1
147,251 - EX28DRAFT_3483 0.32 +0.1
147,251 - EX28DRAFT_3483 0.32 -0.3
147,252 + EX28DRAFT_3483 0.32 +0.1
147,252 + EX28DRAFT_3483 0.32 -0.6
147,253 - EX28DRAFT_3483 0.32 -0.2
147,253 - EX28DRAFT_3483 0.32 -0.1
147,253 - EX28DRAFT_3483 0.32 -0.2
147,294 - EX28DRAFT_3483 0.36 -0.3
147,322 + EX28DRAFT_3483 0.39 +0.2
147,391 + EX28DRAFT_3483 0.46 +0.4
147,392 - EX28DRAFT_3483 0.46 +0.2
147,414 - EX28DRAFT_3483 0.48 +0.4
147,414 - EX28DRAFT_3483 0.48 +0.4
147,426 - EX28DRAFT_3483 0.49 +0.4
147,442 + EX28DRAFT_3483 0.51 +1.1
147,442 + EX28DRAFT_3483 0.51 +0.9
147,443 - EX28DRAFT_3483 0.51 +0.6
147,443 - EX28DRAFT_3483 0.51 -2.2

Or see this region's nucleotide sequence