Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3477 and EX28DRAFT_3478 are separated by 12 nucleotides EX28DRAFT_3478 and EX28DRAFT_3479 are separated by 108 nucleotides EX28DRAFT_3479 and EX28DRAFT_3480 overlap by 8 nucleotides EX28DRAFT_3480 and EX28DRAFT_3481 are separated by 684 nucleotides EX28DRAFT_3481 and EX28DRAFT_3482 overlap by 4 nucleotides
EX28DRAFT_3477: EX28DRAFT_3477 - Helix-turn-helix domain, at 143,895 to 144,509
_3477
EX28DRAFT_3478: EX28DRAFT_3478 - hypothetical protein, at 144,522 to 144,803
_3478
EX28DRAFT_3479: EX28DRAFT_3479 - hypothetical protein, at 144,912 to 145,295
_3479
EX28DRAFT_3480: EX28DRAFT_3480 - hypothetical protein, at 145,288 to 145,623
_3480
EX28DRAFT_3481: EX28DRAFT_3481 - hypothetical protein, at 146,308 to 146,532
_3481
EX28DRAFT_3482: EX28DRAFT_3482 - hypothetical protein, at 146,529 to 146,897
_3482
Position (kb) 145
146 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 144.321 kb on - strand, within EX28DRAFT_3477 at 144.340 kb on - strand, within EX28DRAFT_3477 at 144.421 kb on + strand, within EX28DRAFT_3477 at 144.421 kb on + strand, within EX28DRAFT_3477 at 144.475 kb on - strand at 144.539 kb on - strand at 144.572 kb on + strand, within EX28DRAFT_3478 at 144.614 kb on - strand, within EX28DRAFT_3478 at 144.668 kb on - strand, within EX28DRAFT_3478 at 144.704 kb on - strand, within EX28DRAFT_3478 at 144.751 kb on - strand, within EX28DRAFT_3478 at 144.840 kb on + strand at 145.084 kb on + strand, within EX28DRAFT_3479 at 145.100 kb on - strand, within EX28DRAFT_3479 at 145.123 kb on - strand, within EX28DRAFT_3479 at 145.183 kb on + strand, within EX28DRAFT_3479 at 145.183 kb on + strand, within EX28DRAFT_3479 at 145.200 kb on - strand, within EX28DRAFT_3479 at 145.215 kb on + strand, within EX28DRAFT_3479 at 145.215 kb on + strand, within EX28DRAFT_3479 at 145.215 kb on + strand, within EX28DRAFT_3479 at 145.216 kb on - strand, within EX28DRAFT_3479 at 145.217 kb on + strand, within EX28DRAFT_3479 at 145.294 kb on - strand at 145.294 kb on - strand at 145.296 kb on + strand at 145.297 kb on - strand at 145.297 kb on - strand at 145.300 kb on + strand at 145.301 kb on - strand at 145.318 kb on - strand at 145.365 kb on - strand, within EX28DRAFT_3480 at 145.382 kb on + strand, within EX28DRAFT_3480 at 145.528 kb on - strand, within EX28DRAFT_3480 at 145.561 kb on + strand, within EX28DRAFT_3480 at 145.561 kb on + strand, within EX28DRAFT_3480 at 145.561 kb on + strand, within EX28DRAFT_3480 at 145.562 kb on - strand, within EX28DRAFT_3480 at 145.562 kb on - strand, within EX28DRAFT_3480 at 145.562 kb on - strand, within EX28DRAFT_3480 at 145.562 kb on - strand, within EX28DRAFT_3480 at 145.562 kb on - strand, within EX28DRAFT_3480 at 145.562 kb on - strand, within EX28DRAFT_3480 at 145.673 kb on + strand at 145.673 kb on + strand at 145.675 kb on + strand at 145.675 kb on + strand at 145.676 kb on - strand at 145.680 kb on + strand at 145.706 kb on + strand at 145.714 kb on + strand at 145.743 kb on - strand at 145.761 kb on + strand at 145.764 kb on + strand at 145.764 kb on + strand at 145.765 kb on - strand at 145.843 kb on - strand at 145.865 kb on + strand at 145.866 kb on - strand at 145.952 kb on - strand at 145.998 kb on + strand at 146.010 kb on - strand at 146.130 kb on - strand at 146.399 kb on - strand, within EX28DRAFT_3481 at 146.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 144,321 - EX28DRAFT_3477 0.69 +0.4 144,340 - EX28DRAFT_3477 0.72 -0.3 144,421 + EX28DRAFT_3477 0.86 +0.5 144,421 + EX28DRAFT_3477 0.86 -0.6 144,475 - -0.5 144,539 - -0.6 144,572 + EX28DRAFT_3478 0.18 -0.5 144,614 - EX28DRAFT_3478 0.33 +0.7 144,668 - EX28DRAFT_3478 0.52 -1.6 144,704 - EX28DRAFT_3478 0.65 -1.8 144,751 - EX28DRAFT_3478 0.81 -0.8 144,840 + -0.3 145,084 + EX28DRAFT_3479 0.45 +0.3 145,100 - EX28DRAFT_3479 0.49 +0.1 145,123 - EX28DRAFT_3479 0.55 +0.0 145,183 + EX28DRAFT_3479 0.71 -0.5 145,183 + EX28DRAFT_3479 0.71 +0.2 145,200 - EX28DRAFT_3479 0.75 +0.2 145,215 + EX28DRAFT_3479 0.79 -0.0 145,215 + EX28DRAFT_3479 0.79 +0.1 145,215 + EX28DRAFT_3479 0.79 -0.2 145,216 - EX28DRAFT_3479 0.79 -0.3 145,217 + EX28DRAFT_3479 0.79 -1.3 145,294 - -2.3 145,294 - -0.1 145,296 + +0.0 145,297 - +2.8 145,297 - -0.3 145,300 + -0.3 145,301 - -0.7 145,318 - -0.4 145,365 - EX28DRAFT_3480 0.23 +0.0 145,382 + EX28DRAFT_3480 0.28 -0.4 145,528 - EX28DRAFT_3480 0.71 +1.2 145,561 + EX28DRAFT_3480 0.81 -2.6 145,561 + EX28DRAFT_3480 0.81 -0.2 145,561 + EX28DRAFT_3480 0.81 +0.4 145,562 - EX28DRAFT_3480 0.82 +0.5 145,562 - EX28DRAFT_3480 0.82 +0.1 145,562 - EX28DRAFT_3480 0.82 -0.4 145,562 - EX28DRAFT_3480 0.82 +0.3 145,562 - EX28DRAFT_3480 0.82 +2.2 145,562 - EX28DRAFT_3480 0.82 +1.8 145,673 + +1.0 145,673 + +0.5 145,675 + +1.2 145,675 + +0.7 145,676 - +0.2 145,680 + +0.8 145,706 + +0.2 145,714 + -0.1 145,743 - -0.1 145,761 + -0.9 145,764 + -0.4 145,764 + +0.6 145,765 - -1.1 145,843 - +0.5 145,865 + -0.0 145,866 - -0.3 145,952 - +0.1 145,998 + -1.1 146,010 - -0.4 146,130 - +0.2 146,399 - EX28DRAFT_3481 0.40 +0.6 146,554 - -0.8
Or see this region's nucleotide sequence