Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3378

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3376 and EX28DRAFT_3377 are separated by 66 nucleotidesEX28DRAFT_3377 and EX28DRAFT_3378 are separated by 85 nucleotidesEX28DRAFT_3378 and EX28DRAFT_3379 are separated by 192 nucleotides EX28DRAFT_3376: EX28DRAFT_3376 - ribonuclease R, at 43,907 to 46,351 _3376 EX28DRAFT_3377: EX28DRAFT_3377 - rRNA methylase, putative, group 3, at 46,418 to 47,152 _3377 EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512 _3378 EX28DRAFT_3379: EX28DRAFT_3379 - Acyl-CoA dehydrogenases, at 48,705 to 50,327 _3379 Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 46.397 kb on + strandat 46.402 kb on - strandat 46.402 kb on - strandat 46.434 kb on - strandat 46.516 kb on + strand, within EX28DRAFT_3377at 46.957 kb on + strand, within EX28DRAFT_3377at 46.957 kb on + strand, within EX28DRAFT_3377at 47.321 kb on - strandat 47.323 kb on + strandat 47.323 kb on + strandat 47.413 kb on + strand, within EX28DRAFT_3378at 47.413 kb on + strand, within EX28DRAFT_3378at 47.518 kb on - strand, within EX28DRAFT_3378at 47.771 kb on - strand, within EX28DRAFT_3378at 47.862 kb on - strand, within EX28DRAFT_3378at 48.167 kb on + strand, within EX28DRAFT_3378at 48.168 kb on - strand, within EX28DRAFT_3378at 48.170 kb on + strand, within EX28DRAFT_3378at 48.352 kb on + strand, within EX28DRAFT_3378at 48.353 kb on - strand, within EX28DRAFT_3378at 48.353 kb on - strand, within EX28DRAFT_3378at 48.353 kb on - strand, within EX28DRAFT_3378at 48.483 kb on + strandat 48.484 kb on - strandat 48.484 kb on - strandat 48.526 kb on + strandat 48.670 kb on - strandat 48.673 kb on + strandat 48.674 kb on - strandat 48.854 kb on - strandat 49.327 kb on - strand, within EX28DRAFT_3379at 49.343 kb on + strand, within EX28DRAFT_3379at 49.343 kb on + strand, within EX28DRAFT_3379

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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46,397 + -0.1
46,402 - +0.4
46,402 - -0.2
46,434 - +0.2
46,516 + EX28DRAFT_3377 0.13 -0.7
46,957 + EX28DRAFT_3377 0.73 -0.3
46,957 + EX28DRAFT_3377 0.73 -1.8
47,321 - +0.0
47,323 + -0.8
47,323 + -0.5
47,413 + EX28DRAFT_3378 0.14 +0.3
47,413 + EX28DRAFT_3378 0.14 -2.8
47,518 - EX28DRAFT_3378 0.22 -0.0
47,771 - EX28DRAFT_3378 0.42 +0.3
47,862 - EX28DRAFT_3378 0.49 +1.1
48,167 + EX28DRAFT_3378 0.73 -1.3
48,168 - EX28DRAFT_3378 0.73 +0.6
48,170 + EX28DRAFT_3378 0.73 +0.3
48,352 + EX28DRAFT_3378 0.87 +0.7
48,353 - EX28DRAFT_3378 0.87 +0.1
48,353 - EX28DRAFT_3378 0.87 +0.3
48,353 - EX28DRAFT_3378 0.87 +1.5
48,483 + +0.4
48,484 - -0.1
48,484 - -0.4
48,526 + -0.7
48,670 - +0.7
48,673 + -0.2
48,674 - -0.9
48,854 - +1.2
49,327 - EX28DRAFT_3379 0.38 -0.1
49,343 + EX28DRAFT_3379 0.39 +0.1
49,343 + EX28DRAFT_3379 0.39 +0.1

Or see this region's nucleotide sequence