Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3374 and EX28DRAFT_3375 are separated by 192 nucleotides EX28DRAFT_3375 and EX28DRAFT_3376 are separated by 38 nucleotides EX28DRAFT_3376 and EX28DRAFT_3377 are separated by 66 nucleotides EX28DRAFT_3377 and EX28DRAFT_3378 are separated by 85 nucleotides
EX28DRAFT_3374: EX28DRAFT_3374 - Adenylosuccinate synthetase (EC 6.3.4.4), at 41,910 to 43,250
_3374
EX28DRAFT_3375: EX28DRAFT_3375 - transcriptional regulator, BadM/Rrf2 family, at 43,443 to 43,868
_3375
EX28DRAFT_3376: EX28DRAFT_3376 - ribonuclease R, at 43,907 to 46,351
_3376
EX28DRAFT_3377: EX28DRAFT_3377 - rRNA methylase, putative, group 3, at 46,418 to 47,152
_3377
EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512
_3378
Position (kb) 43
44
45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 43.248 kb on + strand at 43.298 kb on + strand at 43.353 kb on + strand at 43.391 kb on + strand at 43.399 kb on - strand at 43.474 kb on + strand at 43.565 kb on + strand, within EX28DRAFT_3375 at 43.661 kb on + strand, within EX28DRAFT_3375 at 43.806 kb on + strand, within EX28DRAFT_3375 at 43.847 kb on + strand at 43.852 kb on + strand at 43.852 kb on + strand at 43.852 kb on + strand at 44.037 kb on + strand at 44.038 kb on - strand at 44.526 kb on + strand, within EX28DRAFT_3376 at 44.526 kb on + strand, within EX28DRAFT_3376 at 44.756 kb on + strand, within EX28DRAFT_3376 at 44.811 kb on + strand, within EX28DRAFT_3376 at 44.812 kb on - strand, within EX28DRAFT_3376 at 44.819 kb on + strand, within EX28DRAFT_3376 at 44.820 kb on - strand, within EX28DRAFT_3376 at 44.876 kb on + strand, within EX28DRAFT_3376 at 45.053 kb on + strand, within EX28DRAFT_3376 at 45.054 kb on - strand, within EX28DRAFT_3376 at 45.070 kb on + strand, within EX28DRAFT_3376 at 45.124 kb on + strand, within EX28DRAFT_3376 at 45.235 kb on + strand, within EX28DRAFT_3376 at 45.292 kb on + strand, within EX28DRAFT_3376 at 45.388 kb on + strand, within EX28DRAFT_3376 at 45.481 kb on + strand, within EX28DRAFT_3376 at 45.605 kb on - strand, within EX28DRAFT_3376 at 46.397 kb on + strand at 46.402 kb on - strand at 46.402 kb on - strand at 46.434 kb on - strand at 46.516 kb on + strand, within EX28DRAFT_3377 at 46.957 kb on + strand, within EX28DRAFT_3377 at 46.957 kb on + strand, within EX28DRAFT_3377 at 47.321 kb on - strand at 47.323 kb on + strand at 47.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 43,248 + -0.9 43,298 + +0.3 43,353 + -0.0 43,391 + -0.7 43,399 - -0.1 43,474 + +1.8 43,565 + EX28DRAFT_3375 0.29 -2.5 43,661 + EX28DRAFT_3375 0.51 -1.9 43,806 + EX28DRAFT_3375 0.85 -0.6 43,847 + +0.7 43,852 + +0.1 43,852 + -0.5 43,852 + +0.1 44,037 + -1.5 44,038 - -0.8 44,526 + EX28DRAFT_3376 0.25 -1.6 44,526 + EX28DRAFT_3376 0.25 -0.1 44,756 + EX28DRAFT_3376 0.35 -2.7 44,811 + EX28DRAFT_3376 0.37 -0.8 44,812 - EX28DRAFT_3376 0.37 -1.1 44,819 + EX28DRAFT_3376 0.37 -0.5 44,820 - EX28DRAFT_3376 0.37 -0.8 44,876 + EX28DRAFT_3376 0.40 -1.4 45,053 + EX28DRAFT_3376 0.47 -0.9 45,054 - EX28DRAFT_3376 0.47 -2.2 45,070 + EX28DRAFT_3376 0.48 -1.4 45,124 + EX28DRAFT_3376 0.50 -1.8 45,235 + EX28DRAFT_3376 0.54 -4.0 45,292 + EX28DRAFT_3376 0.57 -2.3 45,388 + EX28DRAFT_3376 0.61 -1.1 45,481 + EX28DRAFT_3376 0.64 -1.1 45,605 - EX28DRAFT_3376 0.69 -1.4 46,397 + -0.1 46,402 - +0.4 46,402 - -0.2 46,434 - +0.2 46,516 + EX28DRAFT_3377 0.13 -0.7 46,957 + EX28DRAFT_3377 0.73 -0.3 46,957 + EX28DRAFT_3377 0.73 -1.8 47,321 - +0.0 47,323 + -0.8 47,323 + -0.5
Or see this region's nucleotide sequence