Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3291 and EX28DRAFT_3292 are separated by 5 nucleotides EX28DRAFT_3292 and EX28DRAFT_3293 are separated by 7 nucleotides EX28DRAFT_3293 and EX28DRAFT_3294 are separated by 179 nucleotides
EX28DRAFT_3291: EX28DRAFT_3291 - Predicted membrane protein, at 587,528 to 589,495
_3291
EX28DRAFT_3292: EX28DRAFT_3292 - RND family efflux transporter, MFP subunit, at 589,501 to 590,433
_3292
EX28DRAFT_3293: EX28DRAFT_3293 - Protein of unknown function (DUF1656), at 590,441 to 590,644
_3293
EX28DRAFT_3294: EX28DRAFT_3294 - Transcriptional regulator, at 590,824 to 591,750
_3294
Position (kb) 589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 588.573 kb on + strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.632 kb on - strand, within EX28DRAFT_3291 at 588.640 kb on + strand, within EX28DRAFT_3291 at 588.641 kb on - strand, within EX28DRAFT_3291 at 588.781 kb on + strand, within EX28DRAFT_3291 at 588.782 kb on - strand, within EX28DRAFT_3291 at 588.823 kb on + strand, within EX28DRAFT_3291 at 588.824 kb on - strand, within EX28DRAFT_3291 at 588.824 kb on - strand, within EX28DRAFT_3291 at 588.863 kb on + strand, within EX28DRAFT_3291 at 588.884 kb on - strand, within EX28DRAFT_3291 at 588.911 kb on - strand, within EX28DRAFT_3291 at 588.933 kb on + strand, within EX28DRAFT_3291 at 589.103 kb on - strand, within EX28DRAFT_3291 at 589.118 kb on - strand, within EX28DRAFT_3291 at 589.140 kb on + strand, within EX28DRAFT_3291 at 589.240 kb on + strand, within EX28DRAFT_3291 at 589.240 kb on + strand, within EX28DRAFT_3291 at 589.240 kb on + strand, within EX28DRAFT_3291 at 589.241 kb on - strand, within EX28DRAFT_3291 at 589.241 kb on - strand, within EX28DRAFT_3291 at 589.641 kb on + strand, within EX28DRAFT_3292 at 589.641 kb on + strand, within EX28DRAFT_3292 at 589.641 kb on + strand, within EX28DRAFT_3292 at 589.642 kb on - strand, within EX28DRAFT_3292 at 589.646 kb on - strand, within EX28DRAFT_3292 at 589.731 kb on + strand, within EX28DRAFT_3292 at 589.732 kb on - strand, within EX28DRAFT_3292 at 589.847 kb on + strand, within EX28DRAFT_3292 at 589.860 kb on - strand, within EX28DRAFT_3292 at 589.923 kb on - strand, within EX28DRAFT_3292 at 590.145 kb on - strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.263 kb on - strand, within EX28DRAFT_3292 at 590.342 kb on + strand at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.482 kb on - strand, within EX28DRAFT_3293 at 590.657 kb on - strand at 590.657 kb on - strand at 590.744 kb on + strand at 590.755 kb on - strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.780 kb on - strand at 590.780 kb on - strand at 590.783 kb on + strand at 591.036 kb on + strand, within EX28DRAFT_3294 at 591.037 kb on - strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 588,573 + EX28DRAFT_3291 0.53 -0.0 588,574 - EX28DRAFT_3291 0.53 -2.2 588,574 - EX28DRAFT_3291 0.53 -0.1 588,574 - EX28DRAFT_3291 0.53 -0.6 588,574 - EX28DRAFT_3291 0.53 -0.7 588,632 - EX28DRAFT_3291 0.56 +0.1 588,640 + EX28DRAFT_3291 0.57 -0.8 588,641 - EX28DRAFT_3291 0.57 +0.3 588,781 + EX28DRAFT_3291 0.64 +0.4 588,782 - EX28DRAFT_3291 0.64 +0.4 588,823 + EX28DRAFT_3291 0.66 -0.1 588,824 - EX28DRAFT_3291 0.66 -0.0 588,824 - EX28DRAFT_3291 0.66 +0.9 588,863 + EX28DRAFT_3291 0.68 -1.0 588,884 - EX28DRAFT_3291 0.69 -3.9 588,911 - EX28DRAFT_3291 0.70 +0.6 588,933 + EX28DRAFT_3291 0.71 +0.9 589,103 - EX28DRAFT_3291 0.80 -0.2 589,118 - EX28DRAFT_3291 0.81 -0.4 589,140 + EX28DRAFT_3291 0.82 -0.8 589,240 + EX28DRAFT_3291 0.87 +0.2 589,240 + EX28DRAFT_3291 0.87 +0.1 589,240 + EX28DRAFT_3291 0.87 -0.1 589,241 - EX28DRAFT_3291 0.87 +0.1 589,241 - EX28DRAFT_3291 0.87 -1.7 589,641 + EX28DRAFT_3292 0.15 +0.7 589,641 + EX28DRAFT_3292 0.15 -0.0 589,641 + EX28DRAFT_3292 0.15 -0.1 589,642 - EX28DRAFT_3292 0.15 -0.6 589,646 - EX28DRAFT_3292 0.16 -0.2 589,731 + EX28DRAFT_3292 0.25 -2.6 589,732 - EX28DRAFT_3292 0.25 +1.2 589,847 + EX28DRAFT_3292 0.37 +0.5 589,860 - EX28DRAFT_3292 0.38 +0.1 589,923 - EX28DRAFT_3292 0.45 +0.3 590,145 - EX28DRAFT_3292 0.69 +0.0 590,147 + EX28DRAFT_3292 0.69 +1.1 590,147 + EX28DRAFT_3292 0.69 -0.0 590,263 - EX28DRAFT_3292 0.82 -1.5 590,342 + +0.5 590,481 + EX28DRAFT_3293 0.20 -0.2 590,481 + EX28DRAFT_3293 0.20 -0.1 590,481 + EX28DRAFT_3293 0.20 +1.8 590,481 + EX28DRAFT_3293 0.20 +0.9 590,481 + EX28DRAFT_3293 0.20 -0.6 590,481 + EX28DRAFT_3293 0.20 -0.3 590,482 - EX28DRAFT_3293 0.20 -0.5 590,657 - -0.3 590,657 - +1.3 590,744 + -0.7 590,755 - +0.5 590,756 + +0.9 590,756 + +0.4 590,756 + -0.8 590,780 - -0.6 590,780 - -0.4 590,783 + +0.5 591,036 + EX28DRAFT_3294 0.23 -0.2 591,037 - EX28DRAFT_3294 0.23 -2.6 591,073 + EX28DRAFT_3294 0.27 -2.5 591,073 + EX28DRAFT_3294 0.27 +1.8 591,126 + EX28DRAFT_3294 0.33 -0.6 591,126 + EX28DRAFT_3294 0.33 +0.2
Or see this region's nucleotide sequence