Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3261 and EX28DRAFT_3262 overlap by 4 nucleotides EX28DRAFT_3262 and EX28DRAFT_3263 are separated by 116 nucleotides EX28DRAFT_3263 and EX28DRAFT_3264 are separated by 4 nucleotides EX28DRAFT_3264 and EX28DRAFT_3265 are separated by 135 nucleotides
EX28DRAFT_3261: EX28DRAFT_3261 - monofunctional biosynthetic peptidoglycan transglycosylase, at 551,665 to 552,390
_3261
EX28DRAFT_3262: EX28DRAFT_3262 - Uncharacterized protein involved in an early stage of isoprenoid biosynthesis, at 552,387 to 553,043
_3262
EX28DRAFT_3263: EX28DRAFT_3263 - RNA, at 553,160 to 553,268
_3263
EX28DRAFT_3264: EX28DRAFT_3264 - PAS domain S-box, at 553,273 to 555,606
_3264
EX28DRAFT_3265: EX28DRAFT_3265 - Predicted permeases, at 555,742 to 556,824
_3265
Position (kb) 553
554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 552.295 kb on + strand, within EX28DRAFT_3261 at 552.296 kb on - strand, within EX28DRAFT_3261 at 552.335 kb on - strand at 552.335 kb on - strand at 552.465 kb on - strand, within EX28DRAFT_3262 at 552.465 kb on - strand, within EX28DRAFT_3262 at 552.465 kb on - strand, within EX28DRAFT_3262 at 552.466 kb on + strand, within EX28DRAFT_3262 at 552.492 kb on - strand, within EX28DRAFT_3262 at 552.691 kb on - strand, within EX28DRAFT_3262 at 552.734 kb on + strand, within EX28DRAFT_3262 at 552.806 kb on + strand, within EX28DRAFT_3262 at 552.807 kb on - strand, within EX28DRAFT_3262 at 552.819 kb on - strand, within EX28DRAFT_3262 at 552.834 kb on - strand, within EX28DRAFT_3262 at 552.852 kb on + strand, within EX28DRAFT_3262 at 552.984 kb on + strand at 552.985 kb on - strand at 553.001 kb on - strand at 553.127 kb on - strand at 553.148 kb on + strand at 553.149 kb on - strand at 553.149 kb on - strand at 553.152 kb on + strand at 553.456 kb on - strand at 553.456 kb on - strand at 553.589 kb on + strand, within EX28DRAFT_3264 at 553.589 kb on + strand, within EX28DRAFT_3264 at 553.590 kb on - strand, within EX28DRAFT_3264 at 553.590 kb on - strand, within EX28DRAFT_3264 at 553.590 kb on - strand, within EX28DRAFT_3264 at 553.690 kb on - strand, within EX28DRAFT_3264 at 553.733 kb on - strand, within EX28DRAFT_3264 at 553.757 kb on + strand, within EX28DRAFT_3264 at 553.898 kb on + strand, within EX28DRAFT_3264 at 553.993 kb on + strand, within EX28DRAFT_3264 at 554.595 kb on + strand, within EX28DRAFT_3264 at 554.925 kb on - strand, within EX28DRAFT_3264 at 555.282 kb on + strand, within EX28DRAFT_3264 at 555.576 kb on - strand at 555.606 kb on + strand at 555.637 kb on + strand at 555.638 kb on - strand at 555.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 552,295 + EX28DRAFT_3261 0.87 -0.1 552,296 - EX28DRAFT_3261 0.87 +0.7 552,335 - +0.7 552,335 - +0.4 552,465 - EX28DRAFT_3262 0.12 -0.2 552,465 - EX28DRAFT_3262 0.12 -0.9 552,465 - EX28DRAFT_3262 0.12 +0.2 552,466 + EX28DRAFT_3262 0.12 +0.4 552,492 - EX28DRAFT_3262 0.16 +1.5 552,691 - EX28DRAFT_3262 0.46 +0.1 552,734 + EX28DRAFT_3262 0.53 +2.4 552,806 + EX28DRAFT_3262 0.64 -0.6 552,807 - EX28DRAFT_3262 0.64 +0.3 552,819 - EX28DRAFT_3262 0.66 -1.2 552,834 - EX28DRAFT_3262 0.68 +0.9 552,852 + EX28DRAFT_3262 0.71 -1.4 552,984 + +0.3 552,985 - -0.8 553,001 - -2.9 553,127 - +2.3 553,148 + +0.6 553,149 - +3.3 553,149 - +2.0 553,152 + +1.8 553,456 - +0.1 553,456 - -0.4 553,589 + EX28DRAFT_3264 0.14 -1.6 553,589 + EX28DRAFT_3264 0.14 +0.2 553,590 - EX28DRAFT_3264 0.14 -0.9 553,590 - EX28DRAFT_3264 0.14 -0.4 553,590 - EX28DRAFT_3264 0.14 -0.3 553,690 - EX28DRAFT_3264 0.18 +1.3 553,733 - EX28DRAFT_3264 0.20 -3.1 553,757 + EX28DRAFT_3264 0.21 -1.2 553,898 + EX28DRAFT_3264 0.27 -0.4 553,993 + EX28DRAFT_3264 0.31 -1.2 554,595 + EX28DRAFT_3264 0.57 -1.1 554,925 - EX28DRAFT_3264 0.71 -0.3 555,282 + EX28DRAFT_3264 0.86 -0.8 555,576 - -0.2 555,606 + -0.1 555,637 + -0.9 555,638 - +0.0 555,641 - -0.0
Or see this region's nucleotide sequence