Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3128

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3125 and EX28DRAFT_3126 overlap by 10 nucleotidesEX28DRAFT_3126 and EX28DRAFT_3127 are separated by 179 nucleotidesEX28DRAFT_3127 and EX28DRAFT_3128 are separated by 67 nucleotidesEX28DRAFT_3128 and EX28DRAFT_3129 are separated by 1 nucleotidesEX28DRAFT_3129 and EX28DRAFT_3130 overlap by 1 nucleotidesEX28DRAFT_3130 and EX28DRAFT_3131 are separated by 68 nucleotides EX28DRAFT_3125: EX28DRAFT_3125 - holin, HP1 family, at 428,407 to 428,628 _3125 EX28DRAFT_3126: EX28DRAFT_3126 - P2-like prophage tail protein X, at 428,619 to 428,822 _3126 EX28DRAFT_3127: EX28DRAFT_3127 - DinI-like family, at 429,002 to 429,484 _3127 EX28DRAFT_3128: EX28DRAFT_3128 - Bacteriophage replication gene A protein (GPA), at 429,552 to 431,741 _3128 EX28DRAFT_3129: EX28DRAFT_3129 - transcriptional regulator, TraR/DksA family, at 431,743 to 431,964 _3129 EX28DRAFT_3130: EX28DRAFT_3130 - Protein of unknown function (DUF2732), at 431,964 to 432,191 _3130 EX28DRAFT_3131: EX28DRAFT_3131 - hypothetical protein, at 432,260 to 432,598 _3131 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1at 428.628 kb on + strandat 428.657 kb on + strand, within EX28DRAFT_3126at 428.812 kb on + strandat 428.812 kb on + strandat 428.813 kb on - strandat 428.856 kb on + strandat 428.857 kb on - strandat 429.146 kb on + strand, within EX28DRAFT_3127at 429.286 kb on + strand, within EX28DRAFT_3127at 429.466 kb on + strandat 429.492 kb on + strandat 429.533 kb on + strandat 429.534 kb on - strandat 429.677 kb on + strandat 429.678 kb on - strandat 429.678 kb on - strandat 429.738 kb on + strandat 429.756 kb on + strandat 429.911 kb on + strand, within EX28DRAFT_3128at 429.912 kb on - strand, within EX28DRAFT_3128at 429.947 kb on + strand, within EX28DRAFT_3128at 429.947 kb on + strand, within EX28DRAFT_3128at 430.031 kb on - strand, within EX28DRAFT_3128at 430.394 kb on + strand, within EX28DRAFT_3128at 430.407 kb on + strand, within EX28DRAFT_3128at 430.408 kb on + strand, within EX28DRAFT_3128at 430.409 kb on - strand, within EX28DRAFT_3128at 430.409 kb on - strand, within EX28DRAFT_3128at 430.420 kb on + strand, within EX28DRAFT_3128at 430.522 kb on + strand, within EX28DRAFT_3128at 430.568 kb on + strand, within EX28DRAFT_3128at 430.690 kb on + strand, within EX28DRAFT_3128at 430.690 kb on + strand, within EX28DRAFT_3128at 430.690 kb on + strand, within EX28DRAFT_3128at 430.691 kb on - strand, within EX28DRAFT_3128at 430.691 kb on - strand, within EX28DRAFT_3128at 430.691 kb on - strand, within EX28DRAFT_3128at 430.785 kb on - strand, within EX28DRAFT_3128at 430.788 kb on + strand, within EX28DRAFT_3128at 430.802 kb on - strand, within EX28DRAFT_3128at 431.224 kb on + strand, within EX28DRAFT_3128at 431.225 kb on - strand, within EX28DRAFT_3128at 431.233 kb on + strand, within EX28DRAFT_3128at 431.246 kb on - strand, within EX28DRAFT_3128at 431.268 kb on - strand, within EX28DRAFT_3128at 431.356 kb on + strand, within EX28DRAFT_3128at 431.392 kb on + strand, within EX28DRAFT_3128at 431.392 kb on + strand, within EX28DRAFT_3128at 431.393 kb on - strand, within EX28DRAFT_3128at 431.393 kb on - strand, within EX28DRAFT_3128at 431.467 kb on + strand, within EX28DRAFT_3128at 431.468 kb on - strand, within EX28DRAFT_3128at 431.468 kb on - strand, within EX28DRAFT_3128at 431.683 kb on + strandat 431.684 kb on - strandat 431.736 kb on - strandat 431.744 kb on + strandat 431.745 kb on - strandat 431.745 kb on - strandat 431.763 kb on + strandat 431.771 kb on - strand, within EX28DRAFT_3129at 431.909 kb on + strand, within EX28DRAFT_3129at 431.909 kb on + strand, within EX28DRAFT_3129at 431.909 kb on + strand, within EX28DRAFT_3129at 432.053 kb on - strand, within EX28DRAFT_3130at 432.053 kb on - strand, within EX28DRAFT_3130at 432.053 kb on - strand, within EX28DRAFT_3130at 432.057 kb on - strand, within EX28DRAFT_3130at 432.205 kb on + strandat 432.244 kb on + strandat 432.261 kb on + strandat 432.261 kb on + strandat 432.261 kb on + strandat 432.599 kb on - strandat 432.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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428,628 + -0.5
428,657 + EX28DRAFT_3126 0.19 -0.1
428,812 + +0.0
428,812 + +0.2
428,813 - +0.1
428,856 + -0.2
428,857 - -0.4
429,146 + EX28DRAFT_3127 0.30 -2.3
429,286 + EX28DRAFT_3127 0.59 -0.6
429,466 + -0.3
429,492 + -0.7
429,533 + -0.6
429,534 - -0.9
429,677 + +0.2
429,678 - +0.1
429,678 - -0.2
429,738 + -0.7
429,756 + -0.5
429,911 + EX28DRAFT_3128 0.16 -0.1
429,912 - EX28DRAFT_3128 0.16 -0.2
429,947 + EX28DRAFT_3128 0.18 -0.2
429,947 + EX28DRAFT_3128 0.18 -0.1
430,031 - EX28DRAFT_3128 0.22 -0.0
430,394 + EX28DRAFT_3128 0.38 -2.2
430,407 + EX28DRAFT_3128 0.39 +0.9
430,408 + EX28DRAFT_3128 0.39 +0.4
430,409 - EX28DRAFT_3128 0.39 +0.7
430,409 - EX28DRAFT_3128 0.39 +0.4
430,420 + EX28DRAFT_3128 0.40 -0.6
430,522 + EX28DRAFT_3128 0.44 +0.3
430,568 + EX28DRAFT_3128 0.46 -0.0
430,690 + EX28DRAFT_3128 0.52 +0.3
430,690 + EX28DRAFT_3128 0.52 +0.4
430,690 + EX28DRAFT_3128 0.52 -0.0
430,691 - EX28DRAFT_3128 0.52 +0.6
430,691 - EX28DRAFT_3128 0.52 -0.2
430,691 - EX28DRAFT_3128 0.52 +0.4
430,785 - EX28DRAFT_3128 0.56 +1.1
430,788 + EX28DRAFT_3128 0.56 -0.2
430,802 - EX28DRAFT_3128 0.57 +0.4
431,224 + EX28DRAFT_3128 0.76 +0.3
431,225 - EX28DRAFT_3128 0.76 +0.0
431,233 + EX28DRAFT_3128 0.77 +0.0
431,246 - EX28DRAFT_3128 0.77 +1.5
431,268 - EX28DRAFT_3128 0.78 -0.0
431,356 + EX28DRAFT_3128 0.82 +0.3
431,392 + EX28DRAFT_3128 0.84 -0.2
431,392 + EX28DRAFT_3128 0.84 -0.3
431,393 - EX28DRAFT_3128 0.84 -0.1
431,393 - EX28DRAFT_3128 0.84 +0.7
431,467 + EX28DRAFT_3128 0.87 -0.4
431,468 - EX28DRAFT_3128 0.87 -2.3
431,468 - EX28DRAFT_3128 0.87 -0.2
431,683 + -0.5
431,684 - -0.3
431,736 - +0.1
431,744 + -0.3
431,745 - +0.3
431,745 - -0.0
431,763 + -0.2
431,771 - EX28DRAFT_3129 0.13 -1.9
431,909 + EX28DRAFT_3129 0.75 -1.6
431,909 + EX28DRAFT_3129 0.75 -1.1
431,909 + EX28DRAFT_3129 0.75 +0.6
432,053 - EX28DRAFT_3130 0.39 -3.7
432,053 - EX28DRAFT_3130 0.39 +1.3
432,053 - EX28DRAFT_3130 0.39 -0.3
432,057 - EX28DRAFT_3130 0.41 -0.3
432,205 + +1.3
432,244 + -1.4
432,261 + -2.9
432,261 + -0.1
432,261 + -0.9
432,599 - +0.1
432,599 - +0.1

Or see this region's nucleotide sequence