Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3022

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3020 and EX28DRAFT_3021 overlap by 1 nucleotidesEX28DRAFT_3021 and EX28DRAFT_3022 are separated by 52 nucleotidesEX28DRAFT_3022 and EX28DRAFT_3023 are separated by 111 nucleotides EX28DRAFT_3020: EX28DRAFT_3020 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 330,610 to 331,938 _3020 EX28DRAFT_3021: EX28DRAFT_3021 - poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD, at 331,938 to 332,372 _3021 EX28DRAFT_3022: EX28DRAFT_3022 - Glutathionylspermidine synthase, at 332,425 to 334,287 _3022 EX28DRAFT_3023: EX28DRAFT_3023 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 334,399 to 335,376 _3023 Position (kb) 332 333 334 335Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.585 kb on + strand, within EX28DRAFT_3020at 331.586 kb on - strand, within EX28DRAFT_3020at 331.616 kb on - strand, within EX28DRAFT_3020at 331.756 kb on + strand, within EX28DRAFT_3020at 331.756 kb on + strand, within EX28DRAFT_3020at 331.757 kb on - strand, within EX28DRAFT_3020at 331.757 kb on - strand, within EX28DRAFT_3020at 331.878 kb on + strandat 331.936 kb on + strandat 331.937 kb on - strandat 331.937 kb on - strandat 331.937 kb on - strandat 331.949 kb on + strandat 331.950 kb on - strandat 332.041 kb on - strand, within EX28DRAFT_3021at 332.041 kb on - strand, within EX28DRAFT_3021at 332.111 kb on + strand, within EX28DRAFT_3021at 332.111 kb on + strand, within EX28DRAFT_3021at 332.112 kb on - strand, within EX28DRAFT_3021at 332.112 kb on - strand, within EX28DRAFT_3021at 332.164 kb on + strand, within EX28DRAFT_3021at 332.175 kb on + strand, within EX28DRAFT_3021at 332.175 kb on + strand, within EX28DRAFT_3021at 332.249 kb on + strand, within EX28DRAFT_3021at 332.286 kb on + strand, within EX28DRAFT_3021at 332.287 kb on - strand, within EX28DRAFT_3021at 332.304 kb on + strand, within EX28DRAFT_3021at 332.304 kb on + strand, within EX28DRAFT_3021at 332.305 kb on - strand, within EX28DRAFT_3021at 332.426 kb on + strandat 332.426 kb on + strandat 332.430 kb on + strandat 332.430 kb on + strandat 332.430 kb on + strandat 332.430 kb on + strandat 332.431 kb on - strandat 332.545 kb on + strandat 332.545 kb on + strandat 332.546 kb on - strandat 332.546 kb on - strandat 332.546 kb on - strandat 332.546 kb on - strandat 332.546 kb on - strandat 332.547 kb on + strandat 332.547 kb on + strandat 332.547 kb on + strandat 332.548 kb on - strandat 332.548 kb on - strandat 332.548 kb on - strandat 332.549 kb on + strandat 332.550 kb on - strandat 332.550 kb on - strandat 332.550 kb on - strandat 332.550 kb on - strandat 332.588 kb on + strandat 332.626 kb on - strand, within EX28DRAFT_3022at 332.661 kb on + strand, within EX28DRAFT_3022at 333.108 kb on - strand, within EX28DRAFT_3022at 333.303 kb on - strand, within EX28DRAFT_3022at 333.354 kb on + strand, within EX28DRAFT_3022at 333.354 kb on + strand, within EX28DRAFT_3022at 333.355 kb on - strand, within EX28DRAFT_3022at 333.355 kb on - strand, within EX28DRAFT_3022at 333.355 kb on - strand, within EX28DRAFT_3022at 333.355 kb on - strand, within EX28DRAFT_3022at 333.355 kb on - strand, within EX28DRAFT_3022at 333.578 kb on + strand, within EX28DRAFT_3022at 333.768 kb on - strand, within EX28DRAFT_3022at 334.076 kb on + strand, within EX28DRAFT_3022at 334.076 kb on + strand, within EX28DRAFT_3022at 334.076 kb on + strand, within EX28DRAFT_3022at 334.133 kb on + strandat 334.134 kb on - strandat 334.148 kb on + strandat 334.148 kb on + strandat 334.148 kb on + strandat 334.149 kb on - strandat 334.175 kb on + strandat 334.241 kb on - strandat 334.270 kb on + strandat 334.290 kb on - strandat 334.290 kb on - strandat 334.290 kb on - strandat 334.298 kb on + strandat 334.350 kb on - strandat 334.350 kb on - strandat 334.350 kb on - strandat 334.374 kb on - strandat 334.378 kb on + strandat 334.378 kb on + strandat 334.379 kb on - strandat 334.379 kb on - strandat 334.396 kb on + strandat 334.400 kb on + strandat 334.401 kb on - strandat 334.643 kb on + strand, within EX28DRAFT_3023at 334.643 kb on + strand, within EX28DRAFT_3023at 334.644 kb on - strand, within EX28DRAFT_3023at 334.685 kb on + strand, within EX28DRAFT_3023at 334.685 kb on + strand, within EX28DRAFT_3023at 334.686 kb on - strand, within EX28DRAFT_3023at 334.686 kb on - strand, within EX28DRAFT_3023at 334.710 kb on + strand, within EX28DRAFT_3023at 334.710 kb on + strand, within EX28DRAFT_3023at 334.748 kb on + strand, within EX28DRAFT_3023at 334.748 kb on + strand, within EX28DRAFT_3023at 334.785 kb on + strand, within EX28DRAFT_3023at 334.879 kb on - strand, within EX28DRAFT_3023at 334.955 kb on + strand, within EX28DRAFT_3023at 334.956 kb on - strand, within EX28DRAFT_3023at 335.063 kb on + strand, within EX28DRAFT_3023

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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331,585 + EX28DRAFT_3020 0.73 +0.1
331,586 - EX28DRAFT_3020 0.73 -0.9
331,616 - EX28DRAFT_3020 0.76 +0.5
331,756 + EX28DRAFT_3020 0.86 +0.0
331,756 + EX28DRAFT_3020 0.86 -2.0
331,757 - EX28DRAFT_3020 0.86 +1.4
331,757 - EX28DRAFT_3020 0.86 -0.0
331,878 + -0.2
331,936 + -0.1
331,937 - -0.2
331,937 - +0.8
331,937 - +1.0
331,949 + -0.2
331,950 - -0.7
332,041 - EX28DRAFT_3021 0.24 +0.3
332,041 - EX28DRAFT_3021 0.24 +0.2
332,111 + EX28DRAFT_3021 0.40 +0.5
332,111 + EX28DRAFT_3021 0.40 +0.9
332,112 - EX28DRAFT_3021 0.40 -0.7
332,112 - EX28DRAFT_3021 0.40 -0.2
332,164 + EX28DRAFT_3021 0.52 +0.0
332,175 + EX28DRAFT_3021 0.54 -1.8
332,175 + EX28DRAFT_3021 0.54 +1.4
332,249 + EX28DRAFT_3021 0.71 +2.3
332,286 + EX28DRAFT_3021 0.80 -0.4
332,287 - EX28DRAFT_3021 0.80 -0.0
332,304 + EX28DRAFT_3021 0.84 +0.0
332,304 + EX28DRAFT_3021 0.84 -0.1
332,305 - EX28DRAFT_3021 0.84 -0.9
332,426 + -0.4
332,426 + +0.1
332,430 + -0.1
332,430 + -0.1
332,430 + -0.0
332,430 + -0.2
332,431 - +0.7
332,545 + +0.9
332,545 + -0.2
332,546 - +0.0
332,546 - +0.1
332,546 - -0.3
332,546 - -1.1
332,546 - +0.0
332,547 + -0.3
332,547 + -0.3
332,547 + -1.1
332,548 - +0.2
332,548 - -0.1
332,548 - -0.3
332,549 + +0.5
332,550 - -0.2
332,550 - -1.3
332,550 - +0.1
332,550 - -0.7
332,588 + +2.0
332,626 - EX28DRAFT_3022 0.11 +0.2
332,661 + EX28DRAFT_3022 0.13 +1.2
333,108 - EX28DRAFT_3022 0.37 +0.4
333,303 - EX28DRAFT_3022 0.47 +0.5
333,354 + EX28DRAFT_3022 0.50 +0.4
333,354 + EX28DRAFT_3022 0.50 -3.5
333,355 - EX28DRAFT_3022 0.50 +0.1
333,355 - EX28DRAFT_3022 0.50 -0.6
333,355 - EX28DRAFT_3022 0.50 +0.3
333,355 - EX28DRAFT_3022 0.50 -0.0
333,355 - EX28DRAFT_3022 0.50 +1.2
333,578 + EX28DRAFT_3022 0.62 +1.1
333,768 - EX28DRAFT_3022 0.72 -0.1
334,076 + EX28DRAFT_3022 0.89 -0.1
334,076 + EX28DRAFT_3022 0.89 -2.2
334,076 + EX28DRAFT_3022 0.89 -0.2
334,133 + +0.0
334,134 - -0.2
334,148 + -0.4
334,148 + +0.4
334,148 + +0.0
334,149 - +0.0
334,175 + +0.0
334,241 - -0.3
334,270 + -0.6
334,290 - +0.0
334,290 - -0.4
334,290 - -1.8
334,298 + -0.6
334,350 - -1.2
334,350 - -0.5
334,350 - +0.1
334,374 - -0.1
334,378 + +1.0
334,378 + +0.7
334,379 - -0.8
334,379 - +0.4
334,396 + -0.0
334,400 + -0.1
334,401 - +0.0
334,643 + EX28DRAFT_3023 0.25 +1.7
334,643 + EX28DRAFT_3023 0.25 +0.7
334,644 - EX28DRAFT_3023 0.25 +0.2
334,685 + EX28DRAFT_3023 0.29 +0.3
334,685 + EX28DRAFT_3023 0.29 -1.3
334,686 - EX28DRAFT_3023 0.29 +0.6
334,686 - EX28DRAFT_3023 0.29 +0.9
334,710 + EX28DRAFT_3023 0.32 +0.4
334,710 + EX28DRAFT_3023 0.32 +0.4
334,748 + EX28DRAFT_3023 0.36 -0.8
334,748 + EX28DRAFT_3023 0.36 +0.2
334,785 + EX28DRAFT_3023 0.39 +0.5
334,879 - EX28DRAFT_3023 0.49 +0.7
334,955 + EX28DRAFT_3023 0.57 -0.0
334,956 - EX28DRAFT_3023 0.57 -0.0
335,063 + EX28DRAFT_3023 0.68 +0.2

Or see this region's nucleotide sequence