Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2922 and EX28DRAFT_2923 are separated by 235 nucleotides EX28DRAFT_2923 and EX28DRAFT_2924 are separated by 93 nucleotides
EX28DRAFT_2922: EX28DRAFT_2922 - 5-keto 4-deoxyuronate isomerase, at 233,375 to 234,211
_2922
EX28DRAFT_2923: EX28DRAFT_2923 - acetyl-CoA acetyltransferases, at 234,447 to 235,625
_2923
EX28DRAFT_2924: EX28DRAFT_2924 - Transcriptional regulator, at 235,719 to 236,585
_2924
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.447 kb on - strand at 233.447 kb on - strand at 233.833 kb on - strand, within EX28DRAFT_2922 at 233.891 kb on - strand, within EX28DRAFT_2922 at 233.926 kb on - strand, within EX28DRAFT_2922 at 233.926 kb on - strand, within EX28DRAFT_2922 at 234.062 kb on - strand, within EX28DRAFT_2922 at 234.077 kb on - strand, within EX28DRAFT_2922 at 234.108 kb on + strand, within EX28DRAFT_2922 at 234.125 kb on + strand, within EX28DRAFT_2922 at 234.163 kb on + strand at 234.286 kb on + strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.298 kb on - strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.667 kb on + strand, within EX28DRAFT_2923 at 234.743 kb on - strand, within EX28DRAFT_2923 at 234.780 kb on + strand, within EX28DRAFT_2923 at 235.158 kb on - strand, within EX28DRAFT_2923 at 235.162 kb on + strand, within EX28DRAFT_2923 at 235.162 kb on + strand, within EX28DRAFT_2923 at 235.163 kb on - strand, within EX28DRAFT_2923 at 235.163 kb on - strand, within EX28DRAFT_2923 at 235.163 kb on - strand, within EX28DRAFT_2923 at 235.274 kb on + strand, within EX28DRAFT_2923 at 235.275 kb on - strand, within EX28DRAFT_2923 at 235.587 kb on - strand at 235.609 kb on - strand at 235.609 kb on - strand at 235.612 kb on - strand at 235.612 kb on - strand at 235.684 kb on + strand at 235.738 kb on + strand at 235.739 kb on - strand at 235.739 kb on - strand at 235.984 kb on + strand, within EX28DRAFT_2924 at 235.984 kb on + strand, within EX28DRAFT_2924 at 235.985 kb on - strand, within EX28DRAFT_2924 at 236.071 kb on + strand, within EX28DRAFT_2924 at 236.072 kb on - strand, within EX28DRAFT_2924 at 236.072 kb on - strand, within EX28DRAFT_2924 at 236.103 kb on + strand, within EX28DRAFT_2924 at 236.578 kb on + strand at 236.591 kb on - strand at 236.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 233,447 - -0.2 233,447 - +0.6 233,833 - EX28DRAFT_2922 0.55 -0.7 233,891 - EX28DRAFT_2922 0.62 -0.9 233,926 - EX28DRAFT_2922 0.66 -0.0 233,926 - EX28DRAFT_2922 0.66 -0.1 234,062 - EX28DRAFT_2922 0.82 -3.2 234,077 - EX28DRAFT_2922 0.84 +1.0 234,108 + EX28DRAFT_2922 0.88 +0.2 234,125 + EX28DRAFT_2922 0.90 +0.6 234,163 + +0.2 234,286 + -0.6 234,287 - -0.3 234,287 - -0.8 234,287 - -0.5 234,287 - +2.2 234,287 - -1.5 234,298 - -0.2 234,488 + -2.2 234,488 + +0.5 234,488 + -0.5 234,667 + EX28DRAFT_2923 0.19 -1.7 234,743 - EX28DRAFT_2923 0.25 +0.7 234,780 + EX28DRAFT_2923 0.28 +0.9 235,158 - EX28DRAFT_2923 0.60 -0.3 235,162 + EX28DRAFT_2923 0.61 -0.7 235,162 + EX28DRAFT_2923 0.61 -0.2 235,163 - EX28DRAFT_2923 0.61 -0.3 235,163 - EX28DRAFT_2923 0.61 -0.6 235,163 - EX28DRAFT_2923 0.61 +0.1 235,274 + EX28DRAFT_2923 0.70 +0.1 235,275 - EX28DRAFT_2923 0.70 +0.2 235,587 - -0.5 235,609 - +0.8 235,609 - -2.3 235,612 - -0.1 235,612 - -0.8 235,684 + +2.0 235,738 + +0.0 235,739 - -0.9 235,739 - +0.2 235,984 + EX28DRAFT_2924 0.31 -0.6 235,984 + EX28DRAFT_2924 0.31 -2.3 235,985 - EX28DRAFT_2924 0.31 +0.6 236,071 + EX28DRAFT_2924 0.41 +0.1 236,072 - EX28DRAFT_2924 0.41 -2.1 236,072 - EX28DRAFT_2924 0.41 -0.7 236,103 + EX28DRAFT_2924 0.44 +0.0 236,578 + -0.3 236,591 - +0.4 236,595 - -0.3
Or see this region's nucleotide sequence