Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2909

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2908 and EX28DRAFT_2909 are separated by 93 nucleotidesEX28DRAFT_2909 and EX28DRAFT_2910 overlap by 8 nucleotides EX28DRAFT_2908: EX28DRAFT_2908 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 218,607 to 219,647 _2908 EX28DRAFT_2909: EX28DRAFT_2909 - Major Facilitator Superfamily, at 219,741 to 220,934 _2909 EX28DRAFT_2910: EX28DRAFT_2910 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 220,927 to 223,086 _2910 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 218.763 kb on + strand, within EX28DRAFT_2908at 218.763 kb on + strand, within EX28DRAFT_2908at 218.764 kb on - strand, within EX28DRAFT_2908at 219.249 kb on + strand, within EX28DRAFT_2908at 219.249 kb on + strand, within EX28DRAFT_2908at 219.249 kb on + strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.304 kb on - strand, within EX28DRAFT_2908at 219.323 kb on + strand, within EX28DRAFT_2908at 219.339 kb on + strand, within EX28DRAFT_2908at 219.399 kb on + strand, within EX28DRAFT_2908at 219.400 kb on - strand, within EX28DRAFT_2908at 219.436 kb on - strand, within EX28DRAFT_2908at 219.628 kb on - strandat 219.628 kb on - strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.633 kb on + strandat 219.634 kb on - strandat 219.649 kb on - strandat 219.864 kb on + strand, within EX28DRAFT_2909at 220.009 kb on + strand, within EX28DRAFT_2909at 220.010 kb on - strand, within EX28DRAFT_2909at 220.257 kb on - strand, within EX28DRAFT_2909at 220.341 kb on - strand, within EX28DRAFT_2909at 220.374 kb on + strand, within EX28DRAFT_2909at 220.746 kb on - strand, within EX28DRAFT_2909at 220.746 kb on - strand, within EX28DRAFT_2909at 220.750 kb on + strand, within EX28DRAFT_2909at 220.750 kb on + strand, within EX28DRAFT_2909at 220.751 kb on - strand, within EX28DRAFT_2909at 220.751 kb on - strand, within EX28DRAFT_2909at 220.914 kb on - strandat 221.069 kb on + strandat 221.069 kb on + strandat 221.070 kb on - strandat 221.070 kb on - strandat 221.092 kb on - strandat 221.267 kb on - strand, within EX28DRAFT_2910at 221.296 kb on - strand, within EX28DRAFT_2910at 221.296 kb on - strand, within EX28DRAFT_2910at 221.516 kb on - strand, within EX28DRAFT_2910at 221.639 kb on + strand, within EX28DRAFT_2910at 221.639 kb on + strand, within EX28DRAFT_2910at 221.732 kb on + strand, within EX28DRAFT_2910at 221.732 kb on + strand, within EX28DRAFT_2910at 221.733 kb on - strand, within EX28DRAFT_2910at 221.782 kb on + strand, within EX28DRAFT_2910at 221.782 kb on + strand, within EX28DRAFT_2910at 221.783 kb on - strand, within EX28DRAFT_2910at 221.783 kb on - strand, within EX28DRAFT_2910

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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218,763 + EX28DRAFT_2908 0.15 -0.9
218,763 + EX28DRAFT_2908 0.15 +1.2
218,764 - EX28DRAFT_2908 0.15 -0.4
219,249 + EX28DRAFT_2908 0.62 -0.3
219,249 + EX28DRAFT_2908 0.62 -0.2
219,249 + EX28DRAFT_2908 0.62 -0.4
219,250 - EX28DRAFT_2908 0.62 -0.3
219,250 - EX28DRAFT_2908 0.62 +0.6
219,250 - EX28DRAFT_2908 0.62 -0.4
219,250 - EX28DRAFT_2908 0.62 -1.9
219,304 - EX28DRAFT_2908 0.67 -0.7
219,323 + EX28DRAFT_2908 0.69 -1.6
219,339 + EX28DRAFT_2908 0.70 +0.0
219,399 + EX28DRAFT_2908 0.76 +1.0
219,400 - EX28DRAFT_2908 0.76 +0.5
219,436 - EX28DRAFT_2908 0.80 -0.6
219,628 - +0.8
219,628 - -0.4
219,629 + -0.1
219,629 + -0.7
219,629 + +0.8
219,629 + +0.2
219,629 + -0.3
219,629 + -0.3
219,630 - +0.5
219,630 - +0.4
219,630 - -0.4
219,630 - -0.6
219,630 - -1.9
219,633 + -0.6
219,634 - +1.6
219,649 - -0.1
219,864 + EX28DRAFT_2909 0.10 -0.2
220,009 + EX28DRAFT_2909 0.22 +0.9
220,010 - EX28DRAFT_2909 0.23 -0.3
220,257 - EX28DRAFT_2909 0.43 +0.5
220,341 - EX28DRAFT_2909 0.50 +3.3
220,374 + EX28DRAFT_2909 0.53 -0.5
220,746 - EX28DRAFT_2909 0.84 -0.1
220,746 - EX28DRAFT_2909 0.84 +0.2
220,750 + EX28DRAFT_2909 0.85 +0.3
220,750 + EX28DRAFT_2909 0.85 +1.3
220,751 - EX28DRAFT_2909 0.85 +0.7
220,751 - EX28DRAFT_2909 0.85 +0.2
220,914 - -2.4
221,069 + -0.7
221,069 + -1.4
221,070 - -1.1
221,070 - -0.5
221,092 - -0.4
221,267 - EX28DRAFT_2910 0.16 -0.1
221,296 - EX28DRAFT_2910 0.17 -0.2
221,296 - EX28DRAFT_2910 0.17 -0.6
221,516 - EX28DRAFT_2910 0.27 +0.3
221,639 + EX28DRAFT_2910 0.33 -0.7
221,639 + EX28DRAFT_2910 0.33 +1.1
221,732 + EX28DRAFT_2910 0.37 +0.6
221,732 + EX28DRAFT_2910 0.37 -0.3
221,733 - EX28DRAFT_2910 0.37 +0.9
221,782 + EX28DRAFT_2910 0.40 +0.4
221,782 + EX28DRAFT_2910 0.40 +0.3
221,783 - EX28DRAFT_2910 0.40 -1.6
221,783 - EX28DRAFT_2910 0.40 -0.2

Or see this region's nucleotide sequence