Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2879

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2878 and EX28DRAFT_2879 are separated by 65 nucleotidesEX28DRAFT_2879 and EX28DRAFT_2880 are separated by 112 nucleotidesEX28DRAFT_2880 and EX28DRAFT_2881 are separated by 110 nucleotides EX28DRAFT_2878: EX28DRAFT_2878 - serine transporter, at 184,551 to 185,846 _2878 EX28DRAFT_2879: EX28DRAFT_2879 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 185,912 to 187,279 _2879 EX28DRAFT_2880: EX28DRAFT_2880 - 5'-3' exonuclease (including N-terminal domain of PolI), at 187,392 to 188,147 _2880 EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358 _2881 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 185.006 kb on + strand, within EX28DRAFT_2878at 185.069 kb on + strand, within EX28DRAFT_2878at 185.265 kb on + strand, within EX28DRAFT_2878at 185.265 kb on + strand, within EX28DRAFT_2878at 185.336 kb on + strand, within EX28DRAFT_2878at 185.411 kb on + strand, within EX28DRAFT_2878at 185.422 kb on - strand, within EX28DRAFT_2878at 185.540 kb on + strand, within EX28DRAFT_2878at 185.747 kb on + strandat 185.747 kb on + strandat 185.748 kb on - strandat 185.785 kb on + strandat 185.786 kb on - strandat 185.786 kb on - strandat 185.786 kb on - strandat 185.789 kb on + strandat 185.790 kb on - strandat 185.832 kb on + strandat 185.833 kb on - strandat 185.833 kb on - strandat 185.922 kb on + strandat 186.037 kb on + strandat 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.058 kb on - strand, within EX28DRAFT_2879at 186.058 kb on - strand, within EX28DRAFT_2879at 186.094 kb on + strand, within EX28DRAFT_2879at 186.148 kb on + strand, within EX28DRAFT_2879at 186.326 kb on + strand, within EX28DRAFT_2879at 186.327 kb on - strand, within EX28DRAFT_2879at 186.338 kb on + strand, within EX28DRAFT_2879at 186.338 kb on + strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.342 kb on - strand, within EX28DRAFT_2879at 186.361 kb on + strand, within EX28DRAFT_2879at 186.515 kb on - strand, within EX28DRAFT_2879at 186.646 kb on + strand, within EX28DRAFT_2879at 186.888 kb on - strand, within EX28DRAFT_2879at 186.889 kb on + strand, within EX28DRAFT_2879at 186.889 kb on + strand, within EX28DRAFT_2879at 186.890 kb on - strand, within EX28DRAFT_2879at 186.890 kb on - strand, within EX28DRAFT_2879at 187.036 kb on + strand, within EX28DRAFT_2879at 187.074 kb on + strand, within EX28DRAFT_2879at 187.075 kb on - strand, within EX28DRAFT_2879at 187.075 kb on - strand, within EX28DRAFT_2879at 187.080 kb on + strand, within EX28DRAFT_2879at 187.097 kb on - strand, within EX28DRAFT_2879at 187.135 kb on + strand, within EX28DRAFT_2879at 187.334 kb on + strandat 187.335 kb on - strandat 187.376 kb on - strandat 187.387 kb on + strandat 187.405 kb on + strandat 187.405 kb on + strandat 187.818 kb on + strand, within EX28DRAFT_2880at 187.819 kb on - strand, within EX28DRAFT_2880at 187.819 kb on - strand, within EX28DRAFT_2880at 188.001 kb on + strand, within EX28DRAFT_2880at 188.002 kb on - strand, within EX28DRAFT_2880at 188.092 kb on + strandat 188.092 kb on + strandat 188.104 kb on + strandat 188.104 kb on + strandat 188.123 kb on - strandat 188.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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185,006 + EX28DRAFT_2878 0.35 +0.7
185,069 + EX28DRAFT_2878 0.40 -0.1
185,265 + EX28DRAFT_2878 0.55 +0.2
185,265 + EX28DRAFT_2878 0.55 +0.1
185,336 + EX28DRAFT_2878 0.61 -0.2
185,411 + EX28DRAFT_2878 0.66 -0.2
185,422 - EX28DRAFT_2878 0.67 -1.6
185,540 + EX28DRAFT_2878 0.76 +0.5
185,747 + -0.5
185,747 + +0.0
185,748 - +0.2
185,785 + -1.8
185,786 - -0.6
185,786 - -1.4
185,786 - -0.1
185,789 + +0.3
185,790 - -0.5
185,832 + -0.5
185,833 - +0.3
185,833 - -1.7
185,922 + -1.7
186,037 + +0.2
186,057 + EX28DRAFT_2879 0.11 -1.1
186,057 + EX28DRAFT_2879 0.11 +0.8
186,057 + EX28DRAFT_2879 0.11 -0.9
186,057 + EX28DRAFT_2879 0.11 +0.3
186,057 + EX28DRAFT_2879 0.11 +0.6
186,058 - EX28DRAFT_2879 0.11 +0.2
186,058 - EX28DRAFT_2879 0.11 -0.6
186,094 + EX28DRAFT_2879 0.13 +0.6
186,148 + EX28DRAFT_2879 0.17 -0.5
186,326 + EX28DRAFT_2879 0.30 +0.7
186,327 - EX28DRAFT_2879 0.30 -0.7
186,338 + EX28DRAFT_2879 0.31 -1.9
186,338 + EX28DRAFT_2879 0.31 -1.6
186,339 - EX28DRAFT_2879 0.31 -0.9
186,339 - EX28DRAFT_2879 0.31 -0.4
186,339 - EX28DRAFT_2879 0.31 -0.4
186,339 - EX28DRAFT_2879 0.31 -0.2
186,341 + EX28DRAFT_2879 0.31 -1.3
186,341 + EX28DRAFT_2879 0.31 +0.2
186,341 + EX28DRAFT_2879 0.31 -1.2
186,341 + EX28DRAFT_2879 0.31 -0.4
186,342 - EX28DRAFT_2879 0.31 -1.4
186,361 + EX28DRAFT_2879 0.33 -0.2
186,515 - EX28DRAFT_2879 0.44 -1.7
186,646 + EX28DRAFT_2879 0.54 -3.8
186,888 - EX28DRAFT_2879 0.71 +1.2
186,889 + EX28DRAFT_2879 0.71 -0.0
186,889 + EX28DRAFT_2879 0.71 +0.2
186,890 - EX28DRAFT_2879 0.71 +0.3
186,890 - EX28DRAFT_2879 0.71 -0.4
187,036 + EX28DRAFT_2879 0.82 -0.0
187,074 + EX28DRAFT_2879 0.85 -0.0
187,075 - EX28DRAFT_2879 0.85 -0.1
187,075 - EX28DRAFT_2879 0.85 -0.1
187,080 + EX28DRAFT_2879 0.85 -0.1
187,097 - EX28DRAFT_2879 0.87 -0.2
187,135 + EX28DRAFT_2879 0.89 -0.4
187,334 + -1.0
187,335 - +0.8
187,376 - -0.7
187,387 + -0.3
187,405 + -0.6
187,405 + -1.0
187,818 + EX28DRAFT_2880 0.56 -0.1
187,819 - EX28DRAFT_2880 0.56 -2.4
187,819 - EX28DRAFT_2880 0.56 +0.5
188,001 + EX28DRAFT_2880 0.81 -0.3
188,002 - EX28DRAFT_2880 0.81 +0.4
188,092 + +2.2
188,092 + +0.1
188,104 + -0.1
188,104 + -0.1
188,123 - -0.4
188,137 + -3.6

Or see this region's nucleotide sequence