Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2849 and EX28DRAFT_2850 are separated by 237 nucleotides EX28DRAFT_2850 and EX28DRAFT_2851 are separated by 71 nucleotides EX28DRAFT_2851 and EX28DRAFT_2852 are separated by 15 nucleotides
EX28DRAFT_2849: EX28DRAFT_2849 - uroporphyrin-III C-methyltransferase, at 149,497 to 150,855
_2849
EX28DRAFT_2850: EX28DRAFT_2850 - Predicted aminopeptidases, at 151,093 to 152,136
_2850
EX28DRAFT_2851: EX28DRAFT_2851 - phosphoadenosine phosphosulfate reductase, thioredoxin dependent, at 152,208 to 152,942
_2851
EX28DRAFT_2852: EX28DRAFT_2852 - sulfite reductase (NADPH) hemoprotein, beta-component, at 152,958 to 154,670
_2852
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.685 kb on + strand, within EX28DRAFT_2849 at 150.838 kb on + strand at 150.848 kb on + strand at 150.893 kb on - strand at 150.893 kb on - strand at 150.893 kb on - strand at 150.907 kb on - strand at 150.922 kb on - strand at 150.971 kb on - strand at 150.971 kb on - strand at 151.053 kb on + strand at 151.054 kb on - strand at 151.065 kb on + strand at 151.065 kb on + strand at 151.066 kb on - strand at 151.066 kb on - strand at 151.147 kb on - strand at 151.147 kb on - strand at 151.177 kb on + strand at 151.209 kb on + strand, within EX28DRAFT_2850 at 151.210 kb on - strand, within EX28DRAFT_2850 at 151.340 kb on - strand, within EX28DRAFT_2850 at 151.340 kb on - strand, within EX28DRAFT_2850 at 151.341 kb on + strand, within EX28DRAFT_2850 at 151.342 kb on - strand, within EX28DRAFT_2850 at 151.342 kb on - strand, within EX28DRAFT_2850 at 151.371 kb on + strand, within EX28DRAFT_2850 at 151.372 kb on - strand, within EX28DRAFT_2850 at 151.386 kb on + strand, within EX28DRAFT_2850 at 151.431 kb on + strand, within EX28DRAFT_2850 at 151.431 kb on + strand, within EX28DRAFT_2850 at 151.450 kb on - strand, within EX28DRAFT_2850 at 151.454 kb on - strand, within EX28DRAFT_2850 at 151.729 kb on + strand, within EX28DRAFT_2850 at 151.730 kb on - strand, within EX28DRAFT_2850 at 151.915 kb on + strand, within EX28DRAFT_2850 at 151.915 kb on + strand, within EX28DRAFT_2850 at 151.916 kb on - strand, within EX28DRAFT_2850 at 151.916 kb on - strand, within EX28DRAFT_2850 at 152.143 kb on + strand at 152.144 kb on - strand at 152.163 kb on - strand at 152.163 kb on - strand at 152.365 kb on + strand, within EX28DRAFT_2851 at 152.632 kb on + strand, within EX28DRAFT_2851 at 152.676 kb on - strand, within EX28DRAFT_2851 at 152.778 kb on - strand, within EX28DRAFT_2851 at 152.800 kb on + strand, within EX28DRAFT_2851 at 152.942 kb on + strand at 152.942 kb on + strand at 152.942 kb on + strand at 152.942 kb on + strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.946 kb on + strand at 152.947 kb on - strand at 152.947 kb on - strand at 152.947 kb on - strand at 152.947 kb on - strand at 153.018 kb on - strand at 153.123 kb on - strand at 153.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 150,685 + EX28DRAFT_2849 0.87 -0.6 150,838 + +0.4 150,848 + -1.0 150,893 - -0.7 150,893 - +0.2 150,893 - +0.0 150,907 - +0.5 150,922 - -0.1 150,971 - +0.6 150,971 - -0.7 151,053 + +0.8 151,054 - +0.0 151,065 + -1.5 151,065 + -3.4 151,066 - -1.4 151,066 - -0.0 151,147 - -0.1 151,147 - +0.6 151,177 + -0.1 151,209 + EX28DRAFT_2850 0.11 -0.1 151,210 - EX28DRAFT_2850 0.11 -0.6 151,340 - EX28DRAFT_2850 0.24 -0.5 151,340 - EX28DRAFT_2850 0.24 -0.3 151,341 + EX28DRAFT_2850 0.24 -0.1 151,342 - EX28DRAFT_2850 0.24 -1.1 151,342 - EX28DRAFT_2850 0.24 -0.8 151,371 + EX28DRAFT_2850 0.27 -0.6 151,372 - EX28DRAFT_2850 0.27 +0.3 151,386 + EX28DRAFT_2850 0.28 +0.5 151,431 + EX28DRAFT_2850 0.32 -2.2 151,431 + EX28DRAFT_2850 0.32 +1.0 151,450 - EX28DRAFT_2850 0.34 +0.1 151,454 - EX28DRAFT_2850 0.35 +0.3 151,729 + EX28DRAFT_2850 0.61 -0.6 151,730 - EX28DRAFT_2850 0.61 -0.9 151,915 + EX28DRAFT_2850 0.79 -0.3 151,915 + EX28DRAFT_2850 0.79 -0.3 151,916 - EX28DRAFT_2850 0.79 -0.2 151,916 - EX28DRAFT_2850 0.79 -0.0 152,143 + +1.3 152,144 - -1.8 152,163 - -0.9 152,163 - -1.0 152,365 + EX28DRAFT_2851 0.21 +0.1 152,632 + EX28DRAFT_2851 0.58 +2.4 152,676 - EX28DRAFT_2851 0.64 -0.6 152,778 - EX28DRAFT_2851 0.78 +0.9 152,800 + EX28DRAFT_2851 0.81 -1.8 152,942 + -1.6 152,942 + -1.6 152,942 + -1.1 152,942 + -0.5 152,943 - -1.4 152,943 - -1.3 152,943 - -1.3 152,943 - -2.2 152,946 + -1.5 152,947 - -0.2 152,947 - -0.1 152,947 - -1.3 152,947 - -1.2 153,018 - -0.3 153,123 - -0.5 153,123 - -1.5
Or see this region's nucleotide sequence