Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1970 and EX28DRAFT_1971 are separated by 316 nucleotides EX28DRAFT_1971 and EX28DRAFT_1972 are separated by 69 nucleotides EX28DRAFT_1972 and EX28DRAFT_1973 overlap by 4 nucleotides EX28DRAFT_1973 and EX28DRAFT_1974 are separated by 11 nucleotides EX28DRAFT_1974 and EX28DRAFT_1975 are separated by 10 nucleotides
EX28DRAFT_1970: EX28DRAFT_1970 - CblD like pilus biogenesis initiator, at 1,973,760 to 1,974,917
_1970
EX28DRAFT_1971: EX28DRAFT_1971 - Bacterial regulatory proteins, luxR family, at 1,975,234 to 1,975,479
_1971
EX28DRAFT_1972: EX28DRAFT_1972 - sulfur relay protein, TusE/DsrC/DsvC family, at 1,975,549 to 1,975,878
_1972
EX28DRAFT_1973: EX28DRAFT_1973 - Acylphosphatases, at 1,975,875 to 1,976,156
_1973
EX28DRAFT_1974: EX28DRAFT_1974 - AraC-type DNA-binding domain-containing proteins, at 1,976,168 to 1,976,956
_1974
EX28DRAFT_1975: EX28DRAFT_1975 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 1,976,967 to 1,977,524
_1975
Position (kb) 1975
1976
1977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1974.897 kb on + strand at 1974.897 kb on + strand at 1974.897 kb on + strand at 1974.897 kb on + strand at 1974.898 kb on - strand at 1974.898 kb on - strand at 1974.913 kb on + strand at 1974.914 kb on - strand at 1974.918 kb on - strand at 1975.050 kb on + strand at 1975.202 kb on + strand at 1975.270 kb on + strand, within EX28DRAFT_1971 at 1975.395 kb on + strand, within EX28DRAFT_1971 at 1975.396 kb on - strand, within EX28DRAFT_1971 at 1975.396 kb on - strand, within EX28DRAFT_1971 at 1975.422 kb on + strand, within EX28DRAFT_1971 at 1975.478 kb on - strand at 1975.548 kb on + strand at 1975.877 kb on - strand at 1975.896 kb on + strand at 1975.897 kb on - strand at 1975.937 kb on + strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.196 kb on + strand at 1976.197 kb on - strand at 1976.249 kb on + strand, within EX28DRAFT_1974 at 1976.250 kb on - strand, within EX28DRAFT_1974 at 1976.250 kb on - strand, within EX28DRAFT_1974 at 1976.250 kb on - strand, within EX28DRAFT_1974 at 1976.354 kb on + strand, within EX28DRAFT_1974 at 1976.437 kb on + strand, within EX28DRAFT_1974 at 1976.482 kb on + strand, within EX28DRAFT_1974 at 1976.483 kb on - strand, within EX28DRAFT_1974 at 1976.599 kb on + strand, within EX28DRAFT_1974 at 1976.599 kb on + strand, within EX28DRAFT_1974 at 1976.780 kb on - strand, within EX28DRAFT_1974 at 1976.813 kb on - strand, within EX28DRAFT_1974 at 1976.848 kb on + strand, within EX28DRAFT_1974 at 1976.849 kb on - strand, within EX28DRAFT_1974 at 1976.932 kb on + strand at 1976.932 kb on + strand at 1976.932 kb on + strand at 1976.933 kb on - strand at 1976.945 kb on + strand at 1976.945 kb on + strand at 1976.968 kb on + strand at 1976.968 kb on + strand at 1976.969 kb on - strand at 1976.969 kb on - strand at 1976.977 kb on + strand at 1977.069 kb on - strand, within EX28DRAFT_1975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,974,897 + -0.6 1,974,897 + -0.9 1,974,897 + +1.6 1,974,897 + +2.0 1,974,898 - -1.0 1,974,898 - +0.2 1,974,913 + -1.6 1,974,914 - +0.2 1,974,918 - -1.2 1,975,050 + +2.6 1,975,202 + +1.5 1,975,270 + EX28DRAFT_1971 0.15 -0.0 1,975,395 + EX28DRAFT_1971 0.65 -3.3 1,975,396 - EX28DRAFT_1971 0.66 +0.3 1,975,396 - EX28DRAFT_1971 0.66 +0.1 1,975,422 + EX28DRAFT_1971 0.76 +2.2 1,975,478 - -0.1 1,975,548 + -0.3 1,975,877 - +0.5 1,975,896 + -0.1 1,975,897 - -0.3 1,975,937 + EX28DRAFT_1973 0.22 -0.7 1,976,043 - EX28DRAFT_1973 0.60 -1.0 1,976,043 - EX28DRAFT_1973 0.60 -0.2 1,976,043 - EX28DRAFT_1973 0.60 -0.2 1,976,043 - EX28DRAFT_1973 0.60 -0.1 1,976,196 + -2.7 1,976,197 - +0.6 1,976,249 + EX28DRAFT_1974 0.10 -1.2 1,976,250 - EX28DRAFT_1974 0.10 -1.4 1,976,250 - EX28DRAFT_1974 0.10 -1.0 1,976,250 - EX28DRAFT_1974 0.10 -0.5 1,976,354 + EX28DRAFT_1974 0.24 +1.4 1,976,437 + EX28DRAFT_1974 0.34 -0.6 1,976,482 + EX28DRAFT_1974 0.40 +0.2 1,976,483 - EX28DRAFT_1974 0.40 +0.9 1,976,599 + EX28DRAFT_1974 0.55 -0.2 1,976,599 + EX28DRAFT_1974 0.55 +0.2 1,976,780 - EX28DRAFT_1974 0.78 +0.4 1,976,813 - EX28DRAFT_1974 0.82 -1.3 1,976,848 + EX28DRAFT_1974 0.86 +0.0 1,976,849 - EX28DRAFT_1974 0.86 -0.0 1,976,932 + -1.2 1,976,932 + -0.0 1,976,932 + -0.3 1,976,933 - +4.6 1,976,945 + -0.2 1,976,945 + -0.3 1,976,968 + +0.8 1,976,968 + +0.1 1,976,969 - +0.1 1,976,969 - +0.5 1,976,977 + -0.5 1,977,069 - EX28DRAFT_1975 0.18 -0.2
Or see this region's nucleotide sequence