Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1334 and EX28DRAFT_1335 are separated by 456 nucleotides EX28DRAFT_1335 and EX28DRAFT_1336 are separated by 5 nucleotides
EX28DRAFT_1334: EX28DRAFT_1334 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 1,328,537 to 1,330,339
_1334
EX28DRAFT_1335: EX28DRAFT_1335 - Putative threonine efflux protein, at 1,330,796 to 1,331,386
_1335
EX28DRAFT_1336: EX28DRAFT_1336 - Transcriptional regulator, at 1,331,392 to 1,332,285
_1336
Position (kb) 1330
1331
1332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1329.866 kb on + strand, within EX28DRAFT_1334 at 1330.072 kb on - strand, within EX28DRAFT_1334 at 1330.132 kb on - strand, within EX28DRAFT_1334 at 1330.354 kb on - strand at 1330.509 kb on + strand at 1330.526 kb on - strand at 1330.531 kb on + strand at 1330.532 kb on - strand at 1330.532 kb on - strand at 1330.635 kb on + strand at 1330.636 kb on - strand at 1330.701 kb on + strand at 1330.738 kb on + strand at 1330.819 kb on + strand at 1330.947 kb on + strand, within EX28DRAFT_1335 at 1330.952 kb on - strand, within EX28DRAFT_1335 at 1330.959 kb on + strand, within EX28DRAFT_1335 at 1331.035 kb on + strand, within EX28DRAFT_1335 at 1331.042 kb on + strand, within EX28DRAFT_1335 at 1331.394 kb on - strand at 1331.421 kb on - strand at 1331.441 kb on + strand at 1331.466 kb on + strand at 1331.466 kb on + strand at 1331.467 kb on - strand at 1331.500 kb on + strand, within EX28DRAFT_1336 at 1331.501 kb on - strand, within EX28DRAFT_1336 at 1331.501 kb on - strand, within EX28DRAFT_1336 at 1331.631 kb on - strand, within EX28DRAFT_1336 at 1331.645 kb on + strand, within EX28DRAFT_1336 at 1331.788 kb on + strand, within EX28DRAFT_1336 at 1331.788 kb on + strand, within EX28DRAFT_1336 at 1331.883 kb on + strand, within EX28DRAFT_1336 at 1331.883 kb on + strand, within EX28DRAFT_1336 at 1331.884 kb on - strand, within EX28DRAFT_1336 at 1331.884 kb on - strand, within EX28DRAFT_1336 at 1331.917 kb on + strand, within EX28DRAFT_1336 at 1331.917 kb on + strand, within EX28DRAFT_1336 at 1331.998 kb on - strand, within EX28DRAFT_1336 at 1332.007 kb on - strand, within EX28DRAFT_1336 at 1332.034 kb on - strand, within EX28DRAFT_1336 at 1332.056 kb on + strand, within EX28DRAFT_1336 at 1332.056 kb on + strand, within EX28DRAFT_1336 at 1332.140 kb on - strand, within EX28DRAFT_1336 at 1332.199 kb on - strand at 1332.259 kb on + strand at 1332.339 kb on + strand at 1332.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,329,866 + EX28DRAFT_1334 0.74 +0.2 1,330,072 - EX28DRAFT_1334 0.85 -1.7 1,330,132 - EX28DRAFT_1334 0.88 -0.9 1,330,354 - -1.9 1,330,509 + +0.4 1,330,526 - -0.6 1,330,531 + +1.0 1,330,532 - +0.1 1,330,532 - +2.1 1,330,635 + +0.7 1,330,636 - -1.1 1,330,701 + -2.2 1,330,738 + -0.4 1,330,819 + +0.3 1,330,947 + EX28DRAFT_1335 0.26 -2.6 1,330,952 - EX28DRAFT_1335 0.26 +0.4 1,330,959 + EX28DRAFT_1335 0.28 +0.6 1,331,035 + EX28DRAFT_1335 0.40 -2.8 1,331,042 + EX28DRAFT_1335 0.42 -0.1 1,331,394 - -0.6 1,331,421 - +0.2 1,331,441 + +0.0 1,331,466 + -0.1 1,331,466 + -0.1 1,331,467 - +0.2 1,331,500 + EX28DRAFT_1336 0.12 +0.0 1,331,501 - EX28DRAFT_1336 0.12 +4.8 1,331,501 - EX28DRAFT_1336 0.12 +0.1 1,331,631 - EX28DRAFT_1336 0.27 +1.4 1,331,645 + EX28DRAFT_1336 0.28 -1.0 1,331,788 + EX28DRAFT_1336 0.44 -0.0 1,331,788 + EX28DRAFT_1336 0.44 -1.0 1,331,883 + EX28DRAFT_1336 0.55 -2.1 1,331,883 + EX28DRAFT_1336 0.55 -0.4 1,331,884 - EX28DRAFT_1336 0.55 -2.4 1,331,884 - EX28DRAFT_1336 0.55 -0.3 1,331,917 + EX28DRAFT_1336 0.59 -2.2 1,331,917 + EX28DRAFT_1336 0.59 -0.0 1,331,998 - EX28DRAFT_1336 0.68 +0.4 1,332,007 - EX28DRAFT_1336 0.69 -0.2 1,332,034 - EX28DRAFT_1336 0.72 -0.8 1,332,056 + EX28DRAFT_1336 0.74 +1.9 1,332,056 + EX28DRAFT_1336 0.74 +1.1 1,332,140 - EX28DRAFT_1336 0.84 -0.1 1,332,199 - -0.5 1,332,259 + +1.2 1,332,339 + -0.0 1,332,349 + -0.1
Or see this region's nucleotide sequence