Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1318

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1316 and EX28DRAFT_1317 are separated by 411 nucleotidesEX28DRAFT_1317 and EX28DRAFT_1318 are separated by 69 nucleotidesEX28DRAFT_1318 and EX28DRAFT_1319 overlap by 7 nucleotidesEX28DRAFT_1319 and EX28DRAFT_1320 overlap by 17 nucleotidesEX28DRAFT_1320 and EX28DRAFT_1321 are separated by 3 nucleotides EX28DRAFT_1316: EX28DRAFT_1316 - hypothetical protein, at 1,319,049 to 1,319,327 _1316 EX28DRAFT_1317: EX28DRAFT_1317 - Protein of unknown function (DUF1482), at 1,319,739 to 1,319,936 _1317 EX28DRAFT_1318: EX28DRAFT_1318 - hypothetical protein, at 1,320,006 to 1,320,401 _1318 EX28DRAFT_1319: EX28DRAFT_1319 - hypothetical protein, at 1,320,395 to 1,320,550 _1319 EX28DRAFT_1320: EX28DRAFT_1320 - DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, at 1,320,534 to 1,321,190 _1320 EX28DRAFT_1321: EX28DRAFT_1321 - hypothetical protein, at 1,321,194 to 1,321,859 _1321 Position (kb) 1320 1321Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1319.035 kb on + strandat 1319.114 kb on + strand, within EX28DRAFT_1316at 1319.115 kb on - strand, within EX28DRAFT_1316at 1319.115 kb on - strand, within EX28DRAFT_1316at 1319.182 kb on + strand, within EX28DRAFT_1316at 1319.183 kb on - strand, within EX28DRAFT_1316at 1319.227 kb on - strand, within EX28DRAFT_1316at 1319.239 kb on + strand, within EX28DRAFT_1316at 1319.239 kb on + strand, within EX28DRAFT_1316at 1319.275 kb on + strand, within EX28DRAFT_1316at 1319.275 kb on + strand, within EX28DRAFT_1316at 1319.318 kb on - strandat 1319.364 kb on + strandat 1319.417 kb on + strandat 1319.418 kb on - strandat 1319.509 kb on - strandat 1319.569 kb on + strandat 1319.569 kb on + strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.609 kb on + strandat 1319.967 kb on - strandat 1320.150 kb on + strand, within EX28DRAFT_1318at 1320.151 kb on - strand, within EX28DRAFT_1318at 1320.151 kb on - strand, within EX28DRAFT_1318at 1320.241 kb on - strand, within EX28DRAFT_1318at 1320.294 kb on + strand, within EX28DRAFT_1318at 1320.295 kb on - strand, within EX28DRAFT_1318at 1320.618 kb on - strand, within EX28DRAFT_1320at 1320.618 kb on - strand, within EX28DRAFT_1320at 1320.689 kb on + strand, within EX28DRAFT_1320at 1320.690 kb on - strand, within EX28DRAFT_1320at 1320.701 kb on + strand, within EX28DRAFT_1320at 1320.702 kb on - strand, within EX28DRAFT_1320at 1320.744 kb on + strand, within EX28DRAFT_1320at 1320.763 kb on - strand, within EX28DRAFT_1320at 1320.882 kb on + strand, within EX28DRAFT_1320at 1320.958 kb on - strand, within EX28DRAFT_1320at 1320.982 kb on - strand, within EX28DRAFT_1320at 1321.074 kb on - strand, within EX28DRAFT_1320at 1321.188 kb on + strandat 1321.242 kb on + strandat 1321.243 kb on - strandat 1321.275 kb on - strand, within EX28DRAFT_1321

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,319,035 + +1.1
1,319,114 + EX28DRAFT_1316 0.23 +0.2
1,319,115 - EX28DRAFT_1316 0.24 +3.4
1,319,115 - EX28DRAFT_1316 0.24 -1.5
1,319,182 + EX28DRAFT_1316 0.48 -0.9
1,319,183 - EX28DRAFT_1316 0.48 +0.4
1,319,227 - EX28DRAFT_1316 0.64 -0.3
1,319,239 + EX28DRAFT_1316 0.68 -2.7
1,319,239 + EX28DRAFT_1316 0.68 -1.2
1,319,275 + EX28DRAFT_1316 0.81 +0.0
1,319,275 + EX28DRAFT_1316 0.81 -1.7
1,319,318 - -0.6
1,319,364 + +0.3
1,319,417 + +0.2
1,319,418 - -0.1
1,319,509 - -0.1
1,319,569 + -2.7
1,319,569 + +0.9
1,319,570 - +0.6
1,319,570 - +0.6
1,319,570 - +1.1
1,319,570 - +0.7
1,319,609 + -1.6
1,319,967 - +1.3
1,320,150 + EX28DRAFT_1318 0.36 +1.2
1,320,151 - EX28DRAFT_1318 0.37 +2.0
1,320,151 - EX28DRAFT_1318 0.37 +0.6
1,320,241 - EX28DRAFT_1318 0.59 +0.7
1,320,294 + EX28DRAFT_1318 0.73 -1.7
1,320,295 - EX28DRAFT_1318 0.73 +0.6
1,320,618 - EX28DRAFT_1320 0.13 -0.7
1,320,618 - EX28DRAFT_1320 0.13 +0.5
1,320,689 + EX28DRAFT_1320 0.24 +0.4
1,320,690 - EX28DRAFT_1320 0.24 -1.5
1,320,701 + EX28DRAFT_1320 0.25 -0.2
1,320,702 - EX28DRAFT_1320 0.26 -1.7
1,320,744 + EX28DRAFT_1320 0.32 -0.6
1,320,763 - EX28DRAFT_1320 0.35 +0.8
1,320,882 + EX28DRAFT_1320 0.53 +0.3
1,320,958 - EX28DRAFT_1320 0.65 -0.7
1,320,982 - EX28DRAFT_1320 0.68 -0.1
1,321,074 - EX28DRAFT_1320 0.82 -0.5
1,321,188 + -0.1
1,321,242 + -0.4
1,321,243 - -0.6
1,321,275 - EX28DRAFT_1321 0.12 +0.1

Or see this region's nucleotide sequence