Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1220

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1218 and EX28DRAFT_1219 are separated by 40 nucleotidesEX28DRAFT_1219 and EX28DRAFT_1220 are separated by 163 nucleotidesEX28DRAFT_1220 and EX28DRAFT_1221 are separated by 243 nucleotidesEX28DRAFT_1221 and EX28DRAFT_1222 are separated by 0 nucleotides EX28DRAFT_1218: EX28DRAFT_1218 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,236,676 to 1,237,695 _1218 EX28DRAFT_1219: EX28DRAFT_1219 - Dihydrofolate reductase, at 1,237,736 to 1,238,272 _1219 EX28DRAFT_1220: EX28DRAFT_1220 - hypothetical protein, at 1,238,436 to 1,238,798 _1220 EX28DRAFT_1221: EX28DRAFT_1221 - Protein of unknown function (DUF2554), at 1,239,042 to 1,239,272 _1221 EX28DRAFT_1222: EX28DRAFT_1222 - Collagenase and related proteases, at 1,239,273 to 1,241,237 _1222 Position (kb) 1238 1239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1237.713 kb on + strandat 1237.713 kb on + strandat 1237.779 kb on - strandat 1237.848 kb on - strand, within EX28DRAFT_1219at 1237.908 kb on + strand, within EX28DRAFT_1219at 1237.931 kb on + strand, within EX28DRAFT_1219at 1238.061 kb on + strand, within EX28DRAFT_1219at 1238.061 kb on + strand, within EX28DRAFT_1219at 1238.061 kb on + strand, within EX28DRAFT_1219at 1238.061 kb on + strand, within EX28DRAFT_1219at 1238.062 kb on - strand, within EX28DRAFT_1219at 1238.062 kb on - strand, within EX28DRAFT_1219at 1238.062 kb on - strand, within EX28DRAFT_1219at 1238.152 kb on - strand, within EX28DRAFT_1219at 1238.152 kb on - strand, within EX28DRAFT_1219at 1238.414 kb on + strandat 1238.415 kb on - strandat 1238.415 kb on - strandat 1238.425 kb on - strandat 1238.465 kb on - strandat 1238.472 kb on - strandat 1238.543 kb on - strand, within EX28DRAFT_1220at 1238.563 kb on + strand, within EX28DRAFT_1220at 1238.564 kb on - strand, within EX28DRAFT_1220at 1238.674 kb on - strand, within EX28DRAFT_1220at 1238.708 kb on + strand, within EX28DRAFT_1220at 1238.710 kb on + strand, within EX28DRAFT_1220at 1238.726 kb on + strand, within EX28DRAFT_1220at 1238.788 kb on - strandat 1238.823 kb on + strandat 1238.835 kb on + strandat 1238.836 kb on - strandat 1238.845 kb on + strandat 1238.890 kb on + strandat 1239.074 kb on + strand, within EX28DRAFT_1221at 1239.075 kb on - strand, within EX28DRAFT_1221at 1239.075 kb on - strand, within EX28DRAFT_1221at 1239.111 kb on + strand, within EX28DRAFT_1221at 1239.126 kb on + strand, within EX28DRAFT_1221at 1239.131 kb on - strand, within EX28DRAFT_1221at 1239.131 kb on - strand, within EX28DRAFT_1221at 1239.275 kb on - strandat 1239.275 kb on - strandat 1239.335 kb on + strandat 1239.377 kb on + strandat 1239.442 kb on - strandat 1239.453 kb on - strandat 1239.474 kb on + strand, within EX28DRAFT_1222at 1239.475 kb on - strand, within EX28DRAFT_1222at 1239.475 kb on - strand, within EX28DRAFT_1222at 1239.475 kb on - strand, within EX28DRAFT_1222at 1239.494 kb on + strand, within EX28DRAFT_1222at 1239.495 kb on - strand, within EX28DRAFT_1222at 1239.635 kb on - strand, within EX28DRAFT_1222at 1239.672 kb on + strand, within EX28DRAFT_1222

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,237,713 + +0.6
1,237,713 + +1.1
1,237,779 - -0.3
1,237,848 - EX28DRAFT_1219 0.21 -0.8
1,237,908 + EX28DRAFT_1219 0.32 -0.7
1,237,931 + EX28DRAFT_1219 0.36 -0.6
1,238,061 + EX28DRAFT_1219 0.61 -1.3
1,238,061 + EX28DRAFT_1219 0.61 -1.2
1,238,061 + EX28DRAFT_1219 0.61 -2.4
1,238,061 + EX28DRAFT_1219 0.61 +0.4
1,238,062 - EX28DRAFT_1219 0.61 +0.7
1,238,062 - EX28DRAFT_1219 0.61 +0.7
1,238,062 - EX28DRAFT_1219 0.61 -1.5
1,238,152 - EX28DRAFT_1219 0.77 -1.2
1,238,152 - EX28DRAFT_1219 0.77 -0.0
1,238,414 + -2.9
1,238,415 - -1.5
1,238,415 - +0.4
1,238,425 - -2.4
1,238,465 - -1.7
1,238,472 - -2.5
1,238,543 - EX28DRAFT_1220 0.29 +0.8
1,238,563 + EX28DRAFT_1220 0.35 -0.1
1,238,564 - EX28DRAFT_1220 0.35 -0.6
1,238,674 - EX28DRAFT_1220 0.66 -0.1
1,238,708 + EX28DRAFT_1220 0.75 -0.9
1,238,710 + EX28DRAFT_1220 0.75 +0.5
1,238,726 + EX28DRAFT_1220 0.80 -1.2
1,238,788 - -0.2
1,238,823 + -2.1
1,238,835 + +1.4
1,238,836 - -1.1
1,238,845 + -2.3
1,238,890 + -1.3
1,239,074 + EX28DRAFT_1221 0.14 +1.2
1,239,075 - EX28DRAFT_1221 0.14 -0.5
1,239,075 - EX28DRAFT_1221 0.14 +0.1
1,239,111 + EX28DRAFT_1221 0.30 +1.1
1,239,126 + EX28DRAFT_1221 0.36 -0.1
1,239,131 - EX28DRAFT_1221 0.39 -1.2
1,239,131 - EX28DRAFT_1221 0.39 -0.6
1,239,275 - -1.6
1,239,275 - -1.2
1,239,335 + -1.1
1,239,377 + -0.7
1,239,442 - -0.2
1,239,453 - -0.1
1,239,474 + EX28DRAFT_1222 0.10 -0.5
1,239,475 - EX28DRAFT_1222 0.10 +2.2
1,239,475 - EX28DRAFT_1222 0.10 +0.5
1,239,475 - EX28DRAFT_1222 0.10 +1.4
1,239,494 + EX28DRAFT_1222 0.11 +2.2
1,239,495 - EX28DRAFT_1222 0.11 +0.3
1,239,635 - EX28DRAFT_1222 0.18 -0.6
1,239,672 + EX28DRAFT_1222 0.20 +0.0

Or see this region's nucleotide sequence