Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0961 and EX28DRAFT_0962 are separated by 88 nucleotides EX28DRAFT_0962 and EX28DRAFT_0963 are separated by 153 nucleotides
EX28DRAFT_0961: EX28DRAFT_0961 - exoribonuclease II, at 960,232 to 962,166
_0961
EX28DRAFT_0962: EX28DRAFT_0962 - Uncharacterized protein conserved in bacteria, at 962,255 to 963,241
_0962
EX28DRAFT_0963: EX28DRAFT_0963 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 963,395 to 964,183
_0963
Position (kb) 962
963
964 Strain fitness (log2 ratio) -2
-1
0
1
2 at 961.409 kb on + strand, within EX28DRAFT_0961 at 961.414 kb on - strand, within EX28DRAFT_0961 at 961.545 kb on + strand, within EX28DRAFT_0961 at 962.166 kb on + strand at 962.167 kb on - strand at 962.247 kb on + strand at 962.247 kb on + strand at 962.247 kb on + strand at 962.248 kb on - strand at 962.248 kb on - strand at 962.249 kb on + strand at 962.251 kb on - strand at 962.656 kb on + strand, within EX28DRAFT_0962 at 962.753 kb on + strand, within EX28DRAFT_0962 at 962.753 kb on + strand, within EX28DRAFT_0962 at 962.769 kb on + strand, within EX28DRAFT_0962 at 962.770 kb on - strand, within EX28DRAFT_0962 at 962.770 kb on - strand, within EX28DRAFT_0962 at 962.990 kb on - strand, within EX28DRAFT_0962 at 963.007 kb on + strand, within EX28DRAFT_0962 at 963.054 kb on - strand, within EX28DRAFT_0962 at 963.292 kb on + strand at 963.293 kb on - strand at 963.310 kb on + strand at 963.310 kb on + strand at 963.324 kb on + strand at 963.325 kb on - strand at 963.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 961,409 + EX28DRAFT_0961 0.61 -1.4 961,414 - EX28DRAFT_0961 0.61 -0.9 961,545 + EX28DRAFT_0961 0.68 +2.2 962,166 + +0.1 962,167 - -1.8 962,247 + +2.5 962,247 + -0.4 962,247 + -0.3 962,248 - +0.5 962,248 - +1.0 962,249 + -0.5 962,251 - -0.4 962,656 + EX28DRAFT_0962 0.41 +0.1 962,753 + EX28DRAFT_0962 0.50 +0.9 962,753 + EX28DRAFT_0962 0.50 +0.8 962,769 + EX28DRAFT_0962 0.52 +1.0 962,770 - EX28DRAFT_0962 0.52 +0.3 962,770 - EX28DRAFT_0962 0.52 +0.0 962,990 - EX28DRAFT_0962 0.74 -1.4 963,007 + EX28DRAFT_0962 0.76 +1.0 963,054 - EX28DRAFT_0962 0.81 +2.0 963,292 + -0.0 963,293 - +0.9 963,310 + -0.8 963,310 + -0.7 963,324 + -1.0 963,325 - -1.0 963,396 + -0.8
Or see this region's nucleotide sequence