Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0959

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0957 and EX28DRAFT_0958 are separated by 37 nucleotidesEX28DRAFT_0958 and EX28DRAFT_0959 are separated by 166 nucleotidesEX28DRAFT_0959 and EX28DRAFT_0960 overlap by 4 nucleotides EX28DRAFT_0957: EX28DRAFT_0957 - transcriptional regulator, DeoR family, at 955,879 to 956,631 _0957 EX28DRAFT_0958: EX28DRAFT_0958 - hypothetical protein, at 956,669 to 956,884 _0958 EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920 _0959 EX28DRAFT_0960: EX28DRAFT_0960 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 957,917 to 959,908 _0960 Position (kb) 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1at 956.194 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.341 kb on - strand, within EX28DRAFT_0957at 956.424 kb on - strand, within EX28DRAFT_0957at 956.496 kb on - strand, within EX28DRAFT_0957at 956.559 kb on + strandat 956.631 kb on + strandat 956.631 kb on + strandat 956.632 kb on - strandat 956.632 kb on - strandat 956.642 kb on + strandat 956.940 kb on + strandat 956.955 kb on + strandat 956.956 kb on - strandat 957.050 kb on + strandat 957.051 kb on - strandat 957.051 kb on - strandat 957.060 kb on - strandat 957.071 kb on + strandat 957.123 kb on + strandat 957.194 kb on - strand, within EX28DRAFT_0959at 957.194 kb on - strand, within EX28DRAFT_0959at 957.196 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.286 kb on - strand, within EX28DRAFT_0959at 957.304 kb on + strand, within EX28DRAFT_0959at 957.558 kb on + strand, within EX28DRAFT_0959at 957.609 kb on + strand, within EX28DRAFT_0959at 957.609 kb on + strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.687 kb on + strand, within EX28DRAFT_0959at 957.687 kb on + strand, within EX28DRAFT_0959at 957.818 kb on - strand, within EX28DRAFT_0959at 957.856 kb on - strandat 957.856 kb on - strandat 957.918 kb on + strandat 958.127 kb on - strand, within EX28DRAFT_0960at 958.127 kb on - strand, within EX28DRAFT_0960at 958.136 kb on - strand, within EX28DRAFT_0960at 958.300 kb on + strand, within EX28DRAFT_0960at 958.338 kb on + strand, within EX28DRAFT_0960at 958.338 kb on + strand, within EX28DRAFT_0960at 958.371 kb on - strand, within EX28DRAFT_0960at 958.371 kb on - strand, within EX28DRAFT_0960at 958.528 kb on - strand, within EX28DRAFT_0960at 958.534 kb on + strand, within EX28DRAFT_0960at 958.764 kb on + strand, within EX28DRAFT_0960at 958.764 kb on + strand, within EX28DRAFT_0960at 958.851 kb on + strand, within EX28DRAFT_0960at 958.851 kb on + strand, within EX28DRAFT_0960at 958.852 kb on - strand, within EX28DRAFT_0960at 958.852 kb on - strand, within EX28DRAFT_0960at 958.862 kb on - strand, within EX28DRAFT_0960

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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956,194 + EX28DRAFT_0957 0.42 -2.9
956,276 + EX28DRAFT_0957 0.53 -1.7
956,276 + EX28DRAFT_0957 0.53 -1.1
956,276 + EX28DRAFT_0957 0.53 -0.6
956,276 + EX28DRAFT_0957 0.53 -0.7
956,276 + EX28DRAFT_0957 0.53 -1.7
956,341 - EX28DRAFT_0957 0.61 -1.3
956,424 - EX28DRAFT_0957 0.72 -0.5
956,496 - EX28DRAFT_0957 0.82 +0.0
956,559 + -2.5
956,631 + -3.2
956,631 + -0.5
956,632 - -0.5
956,632 - -1.3
956,642 + +0.4
956,940 + -0.0
956,955 + +0.4
956,956 - +0.1
957,050 + -0.4
957,051 - -2.5
957,051 - -0.7
957,060 - -0.5
957,071 + -0.3
957,123 + -0.6
957,194 - EX28DRAFT_0959 0.16 +0.5
957,194 - EX28DRAFT_0959 0.16 +0.4
957,196 + EX28DRAFT_0959 0.17 -1.7
957,285 + EX28DRAFT_0959 0.27 +1.3
957,285 + EX28DRAFT_0959 0.27 -0.1
957,285 + EX28DRAFT_0959 0.27 +0.8
957,285 + EX28DRAFT_0959 0.27 -2.1
957,286 - EX28DRAFT_0959 0.27 -1.4
957,304 + EX28DRAFT_0959 0.29 +0.9
957,558 + EX28DRAFT_0959 0.58 +1.5
957,609 + EX28DRAFT_0959 0.64 -0.0
957,609 + EX28DRAFT_0959 0.64 -0.3
957,610 - EX28DRAFT_0959 0.64 -0.3
957,610 - EX28DRAFT_0959 0.64 -0.7
957,610 - EX28DRAFT_0959 0.64 +1.5
957,687 + EX28DRAFT_0959 0.73 +0.4
957,687 + EX28DRAFT_0959 0.73 +1.5
957,818 - EX28DRAFT_0959 0.88 +0.6
957,856 - -0.2
957,856 - +0.9
957,918 + -1.1
958,127 - EX28DRAFT_0960 0.11 +0.7
958,127 - EX28DRAFT_0960 0.11 -2.8
958,136 - EX28DRAFT_0960 0.11 +0.7
958,300 + EX28DRAFT_0960 0.19 +0.2
958,338 + EX28DRAFT_0960 0.21 +0.0
958,338 + EX28DRAFT_0960 0.21 +0.1
958,371 - EX28DRAFT_0960 0.23 -1.2
958,371 - EX28DRAFT_0960 0.23 +0.8
958,528 - EX28DRAFT_0960 0.31 +0.7
958,534 + EX28DRAFT_0960 0.31 +0.0
958,764 + EX28DRAFT_0960 0.43 +0.0
958,764 + EX28DRAFT_0960 0.43 +0.2
958,851 + EX28DRAFT_0960 0.47 +0.6
958,851 + EX28DRAFT_0960 0.47 +0.8
958,852 - EX28DRAFT_0960 0.47 +0.8
958,852 - EX28DRAFT_0960 0.47 -0.3
958,862 - EX28DRAFT_0960 0.47 +0.5

Or see this region's nucleotide sequence