Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0920

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0919 and EX28DRAFT_0920 are separated by 610 nucleotidesEX28DRAFT_0920 and EX28DRAFT_0921 are separated by 41 nucleotidesEX28DRAFT_0921 and EX28DRAFT_0922 are separated by 205 nucleotides EX28DRAFT_0919: EX28DRAFT_0919 - hypothetical protein, at 920,646 to 921,272 _0919 EX28DRAFT_0920: EX28DRAFT_0920 - Transcriptional regulators, at 921,883 to 922,836 _0920 EX28DRAFT_0921: EX28DRAFT_0921 - Uncharacterized protein conserved in bacteria, at 922,878 to 923,174 _0921 EX28DRAFT_0922: EX28DRAFT_0922 - TonB family C-terminal domain, at 923,380 to 924,117 _0922 Position (kb) 921 922 923Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 920.945 kb on + strand, within EX28DRAFT_0919at 920.964 kb on + strand, within EX28DRAFT_0919at 920.965 kb on - strand, within EX28DRAFT_0919at 920.965 kb on - strand, within EX28DRAFT_0919at 920.997 kb on - strand, within EX28DRAFT_0919at 921.010 kb on - strand, within EX28DRAFT_0919at 921.064 kb on + strand, within EX28DRAFT_0919at 921.086 kb on + strand, within EX28DRAFT_0919at 921.104 kb on + strand, within EX28DRAFT_0919at 921.129 kb on - strand, within EX28DRAFT_0919at 921.129 kb on - strand, within EX28DRAFT_0919at 921.151 kb on + strand, within EX28DRAFT_0919at 921.151 kb on + strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.152 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.161 kb on - strand, within EX28DRAFT_0919at 921.166 kb on + strand, within EX28DRAFT_0919at 921.196 kb on + strand, within EX28DRAFT_0919at 921.234 kb on + strandat 921.235 kb on - strandat 921.304 kb on + strandat 921.305 kb on - strandat 921.305 kb on - strandat 921.437 kb on + strandat 921.437 kb on + strandat 921.452 kb on + strandat 921.452 kb on + strandat 921.499 kb on - strandat 921.499 kb on - strandat 921.501 kb on - strandat 921.534 kb on - strandat 921.573 kb on + strandat 921.594 kb on + strandat 921.595 kb on - strandat 921.595 kb on - strandat 921.642 kb on + strandat 921.661 kb on + strandat 921.661 kb on + strandat 921.681 kb on - strandat 921.681 kb on - strandat 921.821 kb on - strandat 921.823 kb on + strandat 921.823 kb on + strandat 921.882 kb on + strandat 921.882 kb on + strandat 921.883 kb on - strandat 921.983 kb on - strand, within EX28DRAFT_0920at 922.016 kb on + strand, within EX28DRAFT_0920at 922.022 kb on + strand, within EX28DRAFT_0920at 922.131 kb on + strand, within EX28DRAFT_0920at 922.355 kb on + strand, within EX28DRAFT_0920at 922.356 kb on - strand, within EX28DRAFT_0920at 922.356 kb on - strand, within EX28DRAFT_0920at 922.359 kb on + strand, within EX28DRAFT_0920at 922.360 kb on - strand, within EX28DRAFT_0920at 922.366 kb on + strand, within EX28DRAFT_0920at 922.366 kb on + strand, within EX28DRAFT_0920at 922.367 kb on - strand, within EX28DRAFT_0920at 922.369 kb on - strand, within EX28DRAFT_0920at 922.369 kb on - strand, within EX28DRAFT_0920at 922.369 kb on - strand, within EX28DRAFT_0920at 922.412 kb on - strand, within EX28DRAFT_0920at 922.479 kb on + strand, within EX28DRAFT_0920at 922.602 kb on + strand, within EX28DRAFT_0920at 922.714 kb on - strand, within EX28DRAFT_0920at 922.834 kb on + strandat 922.841 kb on + strandat 922.893 kb on - strandat 922.894 kb on + strandat 923.065 kb on - strand, within EX28DRAFT_0921at 923.207 kb on + strandat 923.207 kb on + strandat 923.208 kb on - strandat 923.213 kb on - strandat 923.240 kb on - strandat 923.260 kb on - strandat 923.260 kb on - strandat 923.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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920,945 + EX28DRAFT_0919 0.48 +1.9
920,964 + EX28DRAFT_0919 0.51 +0.4
920,965 - EX28DRAFT_0919 0.51 -0.4
920,965 - EX28DRAFT_0919 0.51 -1.0
920,997 - EX28DRAFT_0919 0.56 -0.1
921,010 - EX28DRAFT_0919 0.58 +0.4
921,064 + EX28DRAFT_0919 0.67 +0.1
921,086 + EX28DRAFT_0919 0.70 +0.3
921,104 + EX28DRAFT_0919 0.73 +0.3
921,129 - EX28DRAFT_0919 0.77 -0.6
921,129 - EX28DRAFT_0919 0.77 -3.2
921,151 + EX28DRAFT_0919 0.81 -0.0
921,151 + EX28DRAFT_0919 0.81 -0.2
921,152 - EX28DRAFT_0919 0.81 -3.1
921,152 - EX28DRAFT_0919 0.81 +2.9
921,152 - EX28DRAFT_0919 0.81 +0.7
921,161 - EX28DRAFT_0919 0.82 -3.3
921,161 - EX28DRAFT_0919 0.82 -4.0
921,161 - EX28DRAFT_0919 0.82 +0.4
921,166 + EX28DRAFT_0919 0.83 +0.2
921,196 + EX28DRAFT_0919 0.88 -0.8
921,234 + +0.0
921,235 - -2.3
921,304 + +0.5
921,305 - +0.2
921,305 - -1.5
921,437 + -1.3
921,437 + +0.6
921,452 + +2.5
921,452 + +0.2
921,499 - -0.9
921,499 - -0.2
921,501 - -0.9
921,534 - -0.9
921,573 + +1.0
921,594 + -0.3
921,595 - -1.4
921,595 - -1.1
921,642 + +2.5
921,661 + +0.7
921,661 + +0.6
921,681 - -4.0
921,681 - -1.0
921,821 - -0.7
921,823 + +0.1
921,823 + +1.5
921,882 + +0.7
921,882 + +0.0
921,883 - -0.3
921,983 - EX28DRAFT_0920 0.10 +0.9
922,016 + EX28DRAFT_0920 0.14 +1.3
922,022 + EX28DRAFT_0920 0.15 -1.1
922,131 + EX28DRAFT_0920 0.26 +0.1
922,355 + EX28DRAFT_0920 0.49 +0.6
922,356 - EX28DRAFT_0920 0.50 +1.7
922,356 - EX28DRAFT_0920 0.50 +0.3
922,359 + EX28DRAFT_0920 0.50 +0.9
922,360 - EX28DRAFT_0920 0.50 +0.4
922,366 + EX28DRAFT_0920 0.51 +0.6
922,366 + EX28DRAFT_0920 0.51 +0.5
922,367 - EX28DRAFT_0920 0.51 +0.7
922,369 - EX28DRAFT_0920 0.51 +0.4
922,369 - EX28DRAFT_0920 0.51 +0.7
922,369 - EX28DRAFT_0920 0.51 -0.3
922,412 - EX28DRAFT_0920 0.55 -2.9
922,479 + EX28DRAFT_0920 0.62 +0.3
922,602 + EX28DRAFT_0920 0.75 +0.3
922,714 - EX28DRAFT_0920 0.87 +0.3
922,834 + +2.2
922,841 + -1.1
922,893 - -0.5
922,894 + +0.9
923,065 - EX28DRAFT_0921 0.63 -0.4
923,207 + -0.4
923,207 + -0.1
923,208 - +0.8
923,213 - -0.5
923,240 - +0.4
923,260 - -2.0
923,260 - +0.2
923,386 - -1.8

Or see this region's nucleotide sequence