Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0911 and EX28DRAFT_0912 are separated by 12 nucleotides EX28DRAFT_0912 and EX28DRAFT_0913 are separated by 60 nucleotides EX28DRAFT_0913 and EX28DRAFT_0914 are separated by 32 nucleotides EX28DRAFT_0914 and EX28DRAFT_0915 overlap by 11 nucleotides
EX28DRAFT_0911: EX28DRAFT_0911 - Phage tail sheath protein FI, at 913,857 to 915,050
_0911
EX28DRAFT_0912: EX28DRAFT_0912 - phage contractile tail tube protein, P2 family, at 915,063 to 915,581
_0912
EX28DRAFT_0913: EX28DRAFT_0913 - Mu-like prophage FluMu protein gp41, at 915,642 to 915,950
_0913
EX28DRAFT_0914: EX28DRAFT_0914 - Phage P2 GpE, at 915,983 to 916,105
_0914
EX28DRAFT_0915: EX28DRAFT_0915 - phage tail tape measure protein, TP901 family, core region, at 916,095 to 918,542
_0915
Position (kb) 915
916
917 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 915.015 kb on + strand at 915.015 kb on + strand at 915.015 kb on + strand at 915.015 kb on + strand at 915.015 kb on + strand at 915.071 kb on - strand at 915.087 kb on + strand at 915.117 kb on + strand, within EX28DRAFT_0912 at 915.118 kb on - strand, within EX28DRAFT_0912 at 915.360 kb on - strand, within EX28DRAFT_0912 at 915.403 kb on - strand, within EX28DRAFT_0912 at 915.465 kb on + strand, within EX28DRAFT_0912 at 915.465 kb on + strand, within EX28DRAFT_0912 at 915.616 kb on + strand at 915.616 kb on + strand at 915.616 kb on + strand at 915.617 kb on - strand at 915.846 kb on + strand, within EX28DRAFT_0913 at 916.002 kb on + strand, within EX28DRAFT_0914 at 916.002 kb on + strand, within EX28DRAFT_0914 at 916.026 kb on + strand, within EX28DRAFT_0914 at 916.163 kb on + strand at 916.301 kb on + strand at 916.302 kb on - strand at 916.302 kb on - strand at 916.425 kb on + strand, within EX28DRAFT_0915 at 916.426 kb on - strand, within EX28DRAFT_0915 at 916.426 kb on - strand, within EX28DRAFT_0915 at 916.484 kb on + strand, within EX28DRAFT_0915 at 916.484 kb on + strand, within EX28DRAFT_0915 at 916.485 kb on - strand, within EX28DRAFT_0915 at 916.878 kb on - strand, within EX28DRAFT_0915 at 916.878 kb on - strand, within EX28DRAFT_0915 at 916.878 kb on - strand, within EX28DRAFT_0915 at 916.953 kb on - strand, within EX28DRAFT_0915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 915,015 + -0.3 915,015 + +0.9 915,015 + +0.5 915,015 + -0.0 915,015 + +0.5 915,071 - +0.0 915,087 + +2.0 915,117 + EX28DRAFT_0912 0.10 +1.6 915,118 - EX28DRAFT_0912 0.11 +0.2 915,360 - EX28DRAFT_0912 0.57 +0.2 915,403 - EX28DRAFT_0912 0.66 -0.0 915,465 + EX28DRAFT_0912 0.77 +0.1 915,465 + EX28DRAFT_0912 0.77 +0.2 915,616 + -0.1 915,616 + -7.4 915,616 + +1.1 915,617 - +0.9 915,846 + EX28DRAFT_0913 0.66 +1.2 916,002 + EX28DRAFT_0914 0.15 +0.7 916,002 + EX28DRAFT_0914 0.15 +0.3 916,026 + EX28DRAFT_0914 0.35 +1.2 916,163 + -0.1 916,301 + +0.9 916,302 - -0.9 916,302 - -0.5 916,425 + EX28DRAFT_0915 0.13 +0.5 916,426 - EX28DRAFT_0915 0.14 -0.3 916,426 - EX28DRAFT_0915 0.14 +1.7 916,484 + EX28DRAFT_0915 0.16 +0.1 916,484 + EX28DRAFT_0915 0.16 +0.6 916,485 - EX28DRAFT_0915 0.16 +0.3 916,878 - EX28DRAFT_0915 0.32 +0.5 916,878 - EX28DRAFT_0915 0.32 +0.1 916,878 - EX28DRAFT_0915 0.32 +1.1 916,953 - EX28DRAFT_0915 0.35 +0.1
Or see this region's nucleotide sequence