Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0894 and EX28DRAFT_0895 are separated by 3 nucleotides EX28DRAFT_0895 and EX28DRAFT_0896 are separated by 99 nucleotides EX28DRAFT_0896 and EX28DRAFT_0897 overlap by 1 nucleotides EX28DRAFT_0897 and EX28DRAFT_0898 overlap by 10 nucleotides
EX28DRAFT_0894: EX28DRAFT_0894 - phage major capsid protein, P2 family, at 902,827 to 903,921
_0894
EX28DRAFT_0895: EX28DRAFT_0895 - Phage small terminase subunit, at 903,925 to 904,680
_0895
EX28DRAFT_0896: EX28DRAFT_0896 - Phage head completion protein (GPL), at 904,780 to 905,286
_0896
EX28DRAFT_0897: EX28DRAFT_0897 - P2-like prophage tail protein X, at 905,286 to 905,489
_0897
EX28DRAFT_0898: EX28DRAFT_0898 - holin, HP1 family, at 905,480 to 905,701
_0898
Position (kb) 903
904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 903.123 kb on + strand, within EX28DRAFT_0894 at 903.124 kb on - strand, within EX28DRAFT_0894 at 903.127 kb on + strand, within EX28DRAFT_0894 at 903.402 kb on + strand, within EX28DRAFT_0894 at 903.559 kb on + strand, within EX28DRAFT_0894 at 903.560 kb on - strand, within EX28DRAFT_0894 at 903.560 kb on - strand, within EX28DRAFT_0894 at 903.664 kb on + strand, within EX28DRAFT_0894 at 903.720 kb on + strand, within EX28DRAFT_0894 at 903.803 kb on - strand, within EX28DRAFT_0894 at 903.920 kb on - strand at 904.117 kb on + strand, within EX28DRAFT_0895 at 904.118 kb on - strand, within EX28DRAFT_0895 at 904.252 kb on + strand, within EX28DRAFT_0895 at 904.292 kb on - strand, within EX28DRAFT_0895 at 904.508 kb on + strand, within EX28DRAFT_0895 at 904.795 kb on - strand at 904.839 kb on - strand, within EX28DRAFT_0896 at 905.098 kb on + strand, within EX28DRAFT_0896 at 905.137 kb on + strand, within EX28DRAFT_0896 at 905.295 kb on + strand at 905.296 kb on - strand at 905.432 kb on - strand, within EX28DRAFT_0897 at 905.479 kb on + strand at 905.480 kb on - strand at 905.480 kb on - strand at 905.492 kb on - strand at 905.544 kb on - strand, within EX28DRAFT_0898 at 905.580 kb on - strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.621 kb on + strand, within EX28DRAFT_0898 at 905.622 kb on - strand, within EX28DRAFT_0898 at 905.642 kb on + strand, within EX28DRAFT_0898 at 905.643 kb on - strand, within EX28DRAFT_0898
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 903,123 + EX28DRAFT_0894 0.27 +1.6 903,124 - EX28DRAFT_0894 0.27 +1.8 903,127 + EX28DRAFT_0894 0.27 +0.5 903,402 + EX28DRAFT_0894 0.53 +0.9 903,559 + EX28DRAFT_0894 0.67 +1.0 903,560 - EX28DRAFT_0894 0.67 -2.6 903,560 - EX28DRAFT_0894 0.67 +0.0 903,664 + EX28DRAFT_0894 0.76 +1.4 903,720 + EX28DRAFT_0894 0.82 +1.4 903,803 - EX28DRAFT_0894 0.89 +0.7 903,920 - +0.0 904,117 + EX28DRAFT_0895 0.25 +0.9 904,118 - EX28DRAFT_0895 0.26 -2.1 904,252 + EX28DRAFT_0895 0.43 +0.8 904,292 - EX28DRAFT_0895 0.49 +1.9 904,508 + EX28DRAFT_0895 0.77 +2.1 904,795 - -4.1 904,839 - EX28DRAFT_0896 0.12 -0.5 905,098 + EX28DRAFT_0896 0.63 +0.7 905,137 + EX28DRAFT_0896 0.70 -0.5 905,295 + -0.4 905,296 - -1.4 905,432 - EX28DRAFT_0897 0.72 +0.2 905,479 + -2.3 905,480 - +0.9 905,480 - +0.5 905,492 - +0.0 905,544 - EX28DRAFT_0898 0.29 +2.1 905,580 - EX28DRAFT_0898 0.45 -3.8 905,621 + EX28DRAFT_0898 0.64 +0.1 905,621 + EX28DRAFT_0898 0.64 -0.1 905,621 + EX28DRAFT_0898 0.64 +0.8 905,621 + EX28DRAFT_0898 0.64 +3.7 905,622 - EX28DRAFT_0898 0.64 -1.9 905,642 + EX28DRAFT_0898 0.73 -0.3 905,643 - EX28DRAFT_0898 0.73 +0.3
Or see this region's nucleotide sequence